Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01579 (long intergenic non-protein coding RNA 1579)

Identity

Other alias-
HGNC (Hugo) LINC01579
LocusID (NCBI) 283682
Atlas_Id 77587
Location 15q26.2  [Link to chromosome band 15q26]
Location_base_pair Starts at 93896060 and ends at 93900599 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01579   27519
Cards
Entrez_Gene (NCBI)LINC01579  283682  long intergenic non-protein coding RNA 1579
Aliases
GeneCards (Weizmann)LINC01579
Ensembl hg19 (Hinxton)ENSG00000258754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258754 [Gene_View]  chr15:93896060-93900599 [Contig_View]  LINC01579 [Vega]
ICGC DataPortalENSG00000258754
TCGA cBioPortalLINC01579
AceView (NCBI)LINC01579
Genatlas (Paris)LINC01579
WikiGenes283682
SOURCE (Princeton)LINC01579
Genetics Home Reference (NIH)LINC01579
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01579  -     chr15:93896060-93900599 -  15q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01579  -     15q26.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01579 - 15q26.2 [CytoView hg19]  LINC01579 - 15q26.2 [CytoView hg38]
Mapping of homologs : NCBILINC01579 [Mapview hg19]  LINC01579 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI184712 BC037497 BQ436703 CK001917 DA336597
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01579
Cluster EST : UnigeneHs.691121 [ NCBI ]
CGAP (NCI)Hs.691121
Alternative Splicing GalleryENSG00000258754
Gene ExpressionLINC01579 [ NCBI-GEO ]   LINC01579 [ EBI - ARRAY_EXPRESS ]   LINC01579 [ SEEK ]   LINC01579 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01579 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283682
GTEX Portal (Tissue expression)LINC01579
Human Protein AtlasENSG00000258754-LINC01579 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01579
DMDM Disease mutations283682
Blocks (Seattle)LINC01579
Human Protein Atlas [tissue]ENSG00000258754-LINC01579 [tissue]
Protein Interaction databases
FunCoupENSG00000258754
BioGRIDLINC01579
STRING (EMBL)LINC01579
ZODIACLINC01579
Ontologies - Pathways
Huge Navigator LINC01579 [HugePedia]
snp3D : Map Gene to Disease283682
BioCentury BCIQLINC01579
ClinGenLINC01579
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283682
Clinical trialLINC01579
Miscellaneous
canSAR (ICR)LINC01579 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01579
EVEXLINC01579
GoPubMedLINC01579
iHOPLINC01579
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:31 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.