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LINC01580 (long intergenic non-protein coding RNA 1580)

Identity

Other alias-
HGNC (Hugo) LINC01580
LocusID (NCBI) 101927129
Atlas_Id 77197
Location 15q26.2  [Link to chromosome band 15q26]
Location_base_pair Starts at 93900701 and ends at 93973932 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01580   51414
Cards
Entrez_Gene (NCBI)LINC01580  101927129  long intergenic non-protein coding RNA 1580
Aliases
GeneCards (Weizmann)LINC01580
Ensembl hg19 (Hinxton)ENSG00000258785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258785 [Gene_View]  chr15:93900701-93973932 [Contig_View]  LINC01580 [Vega]
ICGC DataPortalENSG00000258785
TCGA cBioPortalLINC01580
AceView (NCBI)LINC01580
Genatlas (Paris)LINC01580
WikiGenes101927129
SOURCE (Princeton)LINC01580
Genetics Home Reference (NIH)LINC01580
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01580  -     chr15:93900701-93973932 +  15q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01580  -     15q26.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01580 - 15q26.2 [CytoView hg19]  LINC01580 - 15q26.2 [CytoView hg38]
Mapping of homologs : NCBILINC01580 [Mapview hg19]  LINC01580 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC021741 DB077575
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01580
Cluster EST : UnigeneHs.652658 [ NCBI ]
CGAP (NCI)Hs.652658
Alternative Splicing GalleryENSG00000258785
Gene ExpressionLINC01580 [ NCBI-GEO ]   LINC01580 [ EBI - ARRAY_EXPRESS ]   LINC01580 [ SEEK ]   LINC01580 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01580 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927129
GTEX Portal (Tissue expression)LINC01580
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01580
DMDM Disease mutations101927129
Blocks (Seattle)LINC01580
Human Protein AtlasENSG00000258785
Protein Interaction databases
FunCoupENSG00000258785
BioGRIDLINC01580
STRING (EMBL)LINC01580
ZODIACLINC01580
Ontologies - Pathways
Huge Navigator LINC01580 [HugePedia]
snp3D : Map Gene to Disease101927129
BioCentury BCIQLINC01580
ClinGenLINC01580
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927129
Clinical trialLINC01580
Miscellaneous
canSAR (ICR)LINC01580 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01580
EVEXLINC01580
GoPubMedLINC01580
iHOPLINC01580
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:59:28 CEST 2017

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