Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01584 (long intergenic non-protein coding RNA 1584)

Identity

Alias_symbol (synonym)TCONS_00024001
Other alias-
HGNC (Hugo) LINC01584
LocusID (NCBI) 101929701
Atlas_Id 77327
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 86083345 and ends at 86116717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01584   51426
Cards
Entrez_Gene (NCBI)LINC01584  101929701  long intergenic non-protein coding RNA 1584
Aliases
GeneCards (Weizmann)LINC01584
Ensembl hg19 (Hinxton)ENSG00000260477 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260477 [Gene_View]  chr15:86083345-86116717 [Contig_View]  LINC01584 [Vega]
ICGC DataPortalENSG00000260477
TCGA cBioPortalLINC01584
AceView (NCBI)LINC01584
Genatlas (Paris)LINC01584
WikiGenes101929701
SOURCE (Princeton)LINC01584
Genetics Home Reference (NIH)LINC01584
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01584  -     chr15:86083345-86116717 -  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01584  -     15q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01584 - 15q25.3 [CytoView hg19]  LINC01584 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01584 [Mapview hg19]  LINC01584 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA620749 BX116292
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01584
Cluster EST : UnigeneHs.132570 [ NCBI ]
CGAP (NCI)Hs.132570
Alternative Splicing GalleryENSG00000260477
Gene ExpressionLINC01584 [ NCBI-GEO ]   LINC01584 [ EBI - ARRAY_EXPRESS ]   LINC01584 [ SEEK ]   LINC01584 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01584 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929701
GTEX Portal (Tissue expression)LINC01584
Human Protein AtlasENSG00000260477-LINC01584 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01584
DMDM Disease mutations101929701
Blocks (Seattle)LINC01584
Human Protein Atlas [tissue]ENSG00000260477-LINC01584 [tissue]
Protein Interaction databases
FunCoupENSG00000260477
BioGRIDLINC01584
STRING (EMBL)LINC01584
ZODIACLINC01584
Ontologies - Pathways
Huge Navigator LINC01584 [HugePedia]
snp3D : Map Gene to Disease101929701
BioCentury BCIQLINC01584
ClinGenLINC01584
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929701
Clinical trialLINC01584
Miscellaneous
canSAR (ICR)LINC01584 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01584
EVEXLINC01584
GoPubMedLINC01584
iHOPLINC01584
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:43 CET 2017

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