Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01586 (long intergenic non-protein coding RNA 1586)

Identity

Alias_symbol (synonym)TCONS_00023252
Other alias-
HGNC (Hugo) LINC01586
LocusID (NCBI) 101929743
Atlas_Id 77597
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 88585571 and ends at 88604603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01586   51434
Cards
Entrez_Gene (NCBI)LINC01586  101929743  long intergenic non-protein coding RNA 1586
Aliases
GeneCards (Weizmann)LINC01586
Ensembl hg19 (Hinxton)ENSG00000249487 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249487 [Gene_View]  chr15:88585571-88604603 [Contig_View]  LINC01586 [Vega]
ICGC DataPortalENSG00000249487
TCGA cBioPortalLINC01586
AceView (NCBI)LINC01586
Genatlas (Paris)LINC01586
WikiGenes101929743
SOURCE (Princeton)LINC01586
Genetics Home Reference (NIH)LINC01586
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01586  -     chr15:88585571-88604603 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01586  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01586 - 15q26.1 [CytoView hg19]  LINC01586 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBILINC01586 [Mapview hg19]  LINC01586 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054749 BX488539
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01586
Cluster EST : UnigeneHs.737047 [ NCBI ]
CGAP (NCI)Hs.737047
Alternative Splicing GalleryENSG00000249487
Gene ExpressionLINC01586 [ NCBI-GEO ]   LINC01586 [ EBI - ARRAY_EXPRESS ]   LINC01586 [ SEEK ]   LINC01586 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01586 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929743
GTEX Portal (Tissue expression)LINC01586
Human Protein AtlasENSG00000249487-LINC01586 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01586
DMDM Disease mutations101929743
Blocks (Seattle)LINC01586
Human Protein Atlas [tissue]ENSG00000249487-LINC01586 [tissue]
Protein Interaction databases
FunCoupENSG00000249487
BioGRIDLINC01586
STRING (EMBL)LINC01586
ZODIACLINC01586
Ontologies - Pathways
Huge Navigator LINC01586 [HugePedia]
snp3D : Map Gene to Disease101929743
BioCentury BCIQLINC01586
ClinGenLINC01586
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929743
Clinical trialLINC01586
Miscellaneous
canSAR (ICR)LINC01586 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01586
EVEXLINC01586
GoPubMedLINC01586
iHOPLINC01586
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:44 CET 2017

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