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LINC01587 (long intergenic non-protein coding RNA 1587)

Identity

Alias_namesC4orf6
chromosome 4 open reading frame 6
Alias_symbol (synonym)aC1
Other alias
HGNC (Hugo) LINC01587
LocusID (NCBI) 10141
Atlas_Id 78047
Location 4p16.2  [Link to chromosome band 4p16]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01587   13716
Cards
Entrez_Gene (NCBI)LINC01587  10141  long intergenic non-protein coding RNA 1587
AliasesC4orf6; aC1
GeneCards (Weizmann)LINC01587
Ensembl hg19 (Hinxton)ENSG00000082929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000082929 [Gene_View]  - [Contig_View]  LINC01587 [Vega]
ICGC DataPortalENSG00000082929
TCGA cBioPortalLINC01587
AceView (NCBI)LINC01587
Genatlas (Paris)LINC01587
WikiGenes10141
SOURCE (Princeton)LINC01587
Genetics Home Reference (NIH)LINC01587
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01587  -  
GoldenPath hg19 (UCSC)LINC01587  -  
EnsemblLINC01587 - [CytoView hg19]  LINC01587 - [CytoView hg38]
Mapping of homologs : NCBILINC01587 [Mapview hg19]  LINC01587 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA281699 AI590573 BC117444 BC117446 BM978917
RefSeq transcript (Entrez)NM_005750
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01587
Cluster EST : UnigeneHs.177972 [ NCBI ]
CGAP (NCI)Hs.177972
Alternative Splicing GalleryENSG00000082929
Gene ExpressionLINC01587 [ NCBI-GEO ]   LINC01587 [ EBI - ARRAY_EXPRESS ]   LINC01587 [ SEEK ]   LINC01587 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01587 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10141
GTEX Portal (Tissue expression)LINC01587
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99440   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99440  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99440
Splice isoforms : SwissVarQ99440
PhosPhoSitePlusQ99440
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01587
DMDM Disease mutations10141
Blocks (Seattle)LINC01587
SuperfamilyQ99440
Human Protein AtlasENSG00000082929
Peptide AtlasQ99440
HPRD12826
IPIIPI00015277   IPI00968212   
Protein Interaction databases
DIP (DOE-UCLA)Q99440
IntAct (EBI)Q99440
FunCoupENSG00000082929
BioGRIDLINC01587
STRING (EMBL)LINC01587
ZODIACLINC01587
Ontologies - Pathways
QuickGOQ99440
Ontology : AmiGOnervous system development  
Ontology : EGO-EBInervous system development  
NDEx NetworkLINC01587
Atlas of Cancer Signalling NetworkLINC01587
Wikipedia pathwaysLINC01587
Orthology - Evolution
OrthoDB10141
GeneTree (enSembl)ENSG00000082929
Phylogenetic Trees/Animal Genes : TreeFamLINC01587
HOVERGENQ99440
HOGENOMQ99440
Homologs : HomoloGeneLINC01587
Homology/Alignments : Family Browser (UCSC)LINC01587
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01587 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01587
dbVarLINC01587
ClinVarLINC01587
1000_GenomesLINC01587 
Exome Variant ServerLINC01587
ExAC (Exome Aggregation Consortium)LINC01587 (select the gene name)
Genetic variants : HAPMAP10141
Genomic Variants (DGV)LINC01587 [DGVbeta]
DECIPHERLINC01587 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01587 
Mutations
ICGC Data PortalLINC01587 
TCGA Data PortalLINC01587 
Broad Tumor PortalLINC01587
OASIS PortalLINC01587 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01587
BioMutasearch LINC01587
DgiDB (Drug Gene Interaction Database)LINC01587
DoCM (Curated mutations)LINC01587 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01587 (select a term)
intoGenLINC01587
Cancer3DLINC01587(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01587
Genetic Testing Registry LINC01587
NextProtQ99440 [Medical]
TSGene10141
GENETestsLINC01587
Target ValidationLINC01587
Huge Navigator LINC01587 [HugePedia]
snp3D : Map Gene to Disease10141
BioCentury BCIQLINC01587
ClinGenLINC01587
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10141
Chemical/Pharm GKB GenePA25910
Clinical trialLINC01587
Miscellaneous
canSAR (ICR)LINC01587 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01587
EVEXLINC01587
GoPubMedLINC01587
iHOPLINC01587
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:53 CEST 2017

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