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LINC01588 (long intergenic non-protein coding RNA 1588)

Identity

Alias_namesC14orf182
chromosome 14 open reading frame 182
Other alias
HGNC (Hugo) LINC01588
LocusID (NCBI) 283551
Atlas_Id 76947
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 50458273 and ends at 50473237 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDC42BPB (14q32.32) / LINC01588 (14q21.3)NEMF (14q21.3) / LINC01588 (14q21.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01588   27503
Cards
Entrez_Gene (NCBI)LINC01588  283551  long intergenic non-protein coding RNA 1588
AliasesC14orf182
GeneCards (Weizmann)LINC01588
Ensembl hg19 (Hinxton)ENSG00000214900 [Gene_View]  chr14:50458273-50473237 [Contig_View]  LINC01588 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214900 [Gene_View]  chr14:50458273-50473237 [Contig_View]  LINC01588 [Vega]
ICGC DataPortalENSG00000214900
TCGA cBioPortalLINC01588
AceView (NCBI)LINC01588
Genatlas (Paris)LINC01588
WikiGenes283551
SOURCE (Princeton)LINC01588
Genetics Home Reference (NIH)LINC01588
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01588  -     chr14:50458273-50473237 -  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01588  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINC01588 - 14q21.3 [CytoView hg19]  LINC01588 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01588 [Mapview hg19]  LINC01588 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090420 AK091232 BC058283 BC128083 BC144351
RefSeq transcript (Entrez)NM_001012706
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LINC01588
Cluster EST : UnigeneHs.739025 [ NCBI ]
CGAP (NCI)Hs.739025
Alternative Splicing GalleryENSG00000214900
Gene ExpressionLINC01588 [ NCBI-GEO ]   LINC01588 [ EBI - ARRAY_EXPRESS ]   LINC01588 [ SEEK ]   LINC01588 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01588 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283551
GTEX Portal (Tissue expression)LINC01588
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01588
DMDM Disease mutations283551
Blocks (Seattle)LINC01588
Human Protein AtlasENSG00000214900
HPRD13397
IPIIPI00854603   IPI00401424   IPI00168770   
Protein Interaction databases
FunCoupENSG00000214900
BioGRIDLINC01588
STRING (EMBL)LINC01588
ZODIACLINC01588
Ontologies - Pathways
Huge Navigator LINC01588 [HugePedia]
snp3D : Map Gene to Disease283551
BioCentury BCIQLINC01588
ClinGenLINC01588
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283551
Chemical/Pharm GKB GenePA164716833
Clinical trialLINC01588
Miscellaneous
canSAR (ICR)LINC01588 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01588
EVEXLINC01588
GoPubMedLINC01588
iHOPLINC01588
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:14:22 CET 2017

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