Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01589 (long intergenic non-protein coding RNA 1589)


Alias (NCBI)TCONS_00029353
HGNC (Hugo) LINC01589
HGNC Alias symbCTA-941F9.9
LocusID (NCBI) 100506737
Atlas_Id 77409
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 45604432 and ends at 45605647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01589   51520
Entrez_Gene (NCBI)LINC01589    long intergenic non-protein coding RNA 1589
GeneCards (Weizmann)LINC01589
Ensembl hg19 (Hinxton)ENSG00000238120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238120 [Gene_View]  ENSG00000238120 [Sequence]  chr22:45604432-45605647 [Contig_View]  LINC01589 [Vega]
ICGC DataPortalENSG00000238120
TCGA cBioPortalLINC01589
AceView (NCBI)LINC01589
Genatlas (Paris)LINC01589
SOURCE (Princeton)LINC01589
Genetics Home Reference (NIH)LINC01589
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01589  -     chr22:45604432-45605647 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01589  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC01589 - 22q13.31 [CytoView hg19]  LINC01589 - 22q13.31 [CytoView hg38]
Genome Data Viewer NCBILINC01589 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC045163 BQ188486
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01589
Gene ExpressionLINC01589 [ NCBI-GEO ]   LINC01589 [ EBI - ARRAY_EXPRESS ]   LINC01589 [ SEEK ]   LINC01589 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01589 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01589 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506737
GTEX Portal (Tissue expression)LINC01589
Human Protein AtlasENSG00000238120-LINC01589 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01589
Human Protein Atlas [tissue]ENSG00000238120-LINC01589 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:58:13 CEST 2021

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