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LINC01589 (long intergenic non-protein coding RNA 1589)

Identity

Alias (NCBI)TCONS_00029353
HGNC (Hugo) LINC01589
HGNC Alias symbCTA-941F9.9
TCONS_00029353
LocusID (NCBI) 100506737
Atlas_Id 77409
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 45604432 and ends at 45605647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC01589   51520
Cards
Entrez_Gene (NCBI)LINC01589    long intergenic non-protein coding RNA 1589
AliasesTCONS_00029353
GeneCards (Weizmann)LINC01589
Ensembl hg19 (Hinxton)ENSG00000238120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238120 [Gene_View]  ENSG00000238120 [Sequence]  chr22:45604432-45605647 [Contig_View]  LINC01589 [Vega]
ICGC DataPortalENSG00000238120
TCGA cBioPortalLINC01589
AceView (NCBI)LINC01589
Genatlas (Paris)LINC01589
SOURCE (Princeton)LINC01589
Genetics Home Reference (NIH)LINC01589
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01589  -     chr22:45604432-45605647 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01589  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC01589 - 22q13.31 [CytoView hg19]  LINC01589 - 22q13.31 [CytoView hg38]
ImmunoBaseENSG00000238120
Genome Data Viewer NCBILINC01589 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC045163 BQ188486
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01589
Gene ExpressionLINC01589 [ NCBI-GEO ]   LINC01589 [ EBI - ARRAY_EXPRESS ]   LINC01589 [ SEEK ]   LINC01589 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01589 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01589 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506737
GTEX Portal (Tissue expression)LINC01589
Human Protein AtlasENSG00000238120-LINC01589 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01589
Human Protein Atlas [tissue]ENSG00000238120-LINC01589 [tissue]
Protein Interaction databases
BioGRIDLINC01589
STRING (EMBL)LINC01589
ZODIACLINC01589
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC01589
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:58:13 CEST 2021

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