Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01590 (long intergenic non-protein coding RNA 1590)

Identity

Alias_namesC6orf164
chromosome 6 open reading frame 164
Alias_symbol (synonym)dJ102H19.4
Other alias
HGNC (Hugo) LINC01590
LocusID (NCBI) 63914
Atlas_Id 77465
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 87397122 and ends at 87399741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01590   21404
Cards
Entrez_Gene (NCBI)LINC01590  63914  long intergenic non-protein coding RNA 1590
AliasesC6orf164; dJ102H19.4
GeneCards (Weizmann)LINC01590
Ensembl hg19 (Hinxton)ENSG00000111850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111850 [Gene_View]  ENSG00000111850 [Sequence]  chr6:87397122-87399741 [Contig_View]  LINC01590 [Vega]
ICGC DataPortalENSG00000111850
TCGA cBioPortalLINC01590
AceView (NCBI)LINC01590
Genatlas (Paris)LINC01590
WikiGenes63914
SOURCE (Princeton)LINC01590
Genetics Home Reference (NIH)LINC01590
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01590  -     chr6:87397122-87399741 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01590  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblLINC01590 - 6q15 [CytoView hg19]  LINC01590 - 6q15 [CytoView hg38]
Mapping of homologs : NCBILINC01590 [Mapview hg19]  LINC01590 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021476
RefSeq transcript (Entrez)NM_022084
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01590
Cluster EST : UnigeneHs.645177 [ NCBI ]
CGAP (NCI)Hs.645177
Alternative Splicing GalleryENSG00000111850
Gene ExpressionLINC01590 [ NCBI-GEO ]   LINC01590 [ EBI - ARRAY_EXPRESS ]   LINC01590 [ SEEK ]   LINC01590 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01590 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63914
GTEX Portal (Tissue expression)LINC01590
Human Protein AtlasENSG00000111850-LINC01590 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TEZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TEZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TEZ4
Splice isoforms : SwissVarQ5TEZ4
PhosPhoSitePlusQ5TEZ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01590
DMDM Disease mutations63914
Blocks (Seattle)LINC01590
SuperfamilyQ5TEZ4
Human Protein Atlas [tissue]ENSG00000111850-LINC01590 [tissue]
Peptide AtlasQ5TEZ4
IPIIPI00514784   
Protein Interaction databases
DIP (DOE-UCLA)Q5TEZ4
IntAct (EBI)Q5TEZ4
FunCoupENSG00000111850
BioGRIDLINC01590
STRING (EMBL)LINC01590
ZODIACLINC01590
Ontologies - Pathways
QuickGOQ5TEZ4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01590
Atlas of Cancer Signalling NetworkLINC01590
Wikipedia pathwaysLINC01590
Orthology - Evolution
OrthoDB63914
GeneTree (enSembl)ENSG00000111850
Phylogenetic Trees/Animal Genes : TreeFamLINC01590
HOVERGENQ5TEZ4
HOGENOMQ5TEZ4
Homologs : HomoloGeneLINC01590
Homology/Alignments : Family Browser (UCSC)LINC01590
Gene fusions - Rearrangements
Fusion : QuiverLINC01590
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01590 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01590
dbVarLINC01590
ClinVarLINC01590
1000_GenomesLINC01590 
Exome Variant ServerLINC01590
ExAC (Exome Aggregation Consortium)ENSG00000111850
GNOMAD BrowserENSG00000111850
Varsome BrowserLINC01590
Genetic variants : HAPMAP63914
Genomic Variants (DGV)LINC01590 [DGVbeta]
DECIPHERLINC01590 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01590 
Mutations
ICGC Data PortalLINC01590 
TCGA Data PortalLINC01590 
Broad Tumor PortalLINC01590
OASIS PortalLINC01590 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01590
BioMutasearch LINC01590
DgiDB (Drug Gene Interaction Database)LINC01590
DoCM (Curated mutations)LINC01590 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01590 (select a term)
intoGenLINC01590
Cancer3DLINC01590(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01590
MedgenLINC01590
Genetic Testing Registry LINC01590
NextProtQ5TEZ4 [Medical]
TSGene63914
GENETestsLINC01590
Target ValidationLINC01590
Huge Navigator LINC01590 [HugePedia]
snp3D : Map Gene to Disease63914
BioCentury BCIQLINC01590
ClinGenLINC01590
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63914
Chemical/Pharm GKB GenePA134945789
Clinical trialLINC01590
Miscellaneous
canSAR (ICR)LINC01590 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01590
EVEXLINC01590
GoPubMedLINC01590
iHOPLINC01590
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:55:27 CEST 2018

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