Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01599 (long intergenic non-protein coding RNA 1599)

Identity

Alias_namesC14orf183
chromosome 14 open reading frame 183
Other alias
HGNC (Hugo) LINC01599
LocusID (NCBI) 196913
Atlas_Id 54164
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 50550369 and ends at 50559361 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MBIP (14q13.3) / LINC01599 (14q21.3)NEMF (14q21.3) / LINC01599 (14q21.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)LINC01599   27285
Cards
Entrez_Gene (NCBI)LINC01599  196913  long intergenic non-protein coding RNA 1599
AliasesC14orf183
GeneCards (Weizmann)LINC01599
Ensembl hg19 (Hinxton) [Gene_View]  chr14:50550369-50559361 [Contig_View]  LINC01599 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:50550369-50559361 [Contig_View]  LINC01599 [Vega]
TCGA cBioPortalLINC01599
AceView (NCBI)LINC01599
Genatlas (Paris)LINC01599
WikiGenes196913
SOURCE (Princeton)LINC01599
Genetics Home Reference (NIH)LINC01599
Genomic and cartography
GoldenPath hg19 (UCSC)LINC01599  -     chr14:50550369-50559361 -  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC01599  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINC01599 - 14q21.3 [CytoView hg19]  LINC01599 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01599 [Mapview hg19]  LINC01599 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF390030 BC067360 BC084561 BF055388 BF691660
RefSeq transcript (Entrez)NM_001014830
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LINC01599
Cluster EST : UnigeneHs.732459 [ NCBI ]
CGAP (NCI)Hs.732459
Gene ExpressionLINC01599 [ NCBI-GEO ]   LINC01599 [ EBI - ARRAY_EXPRESS ]   LINC01599 [ SEEK ]   LINC01599 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01599 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196913
GTEX Portal (Tissue expression)LINC01599
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXQ3
Splice isoforms : SwissVarQ8WXQ3
PhosPhoSitePlusQ8WXQ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01599
DMDM Disease mutations196913
Blocks (Seattle)LINC01599
SuperfamilyQ8WXQ3
Peptide AtlasQ8WXQ3
HPRD18572
IPIIPI00103580   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXQ3
IntAct (EBI)Q8WXQ3
BioGRIDLINC01599
STRING (EMBL)LINC01599
ZODIACLINC01599
Ontologies - Pathways
QuickGOQ8WXQ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01599
Atlas of Cancer Signalling NetworkLINC01599
Wikipedia pathwaysLINC01599
Orthology - Evolution
OrthoDB196913
Phylogenetic Trees/Animal Genes : TreeFamLINC01599
HOVERGENQ8WXQ3
HOGENOMQ8WXQ3
Homologs : HomoloGeneLINC01599
Homology/Alignments : Family Browser (UCSC)LINC01599
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01599 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01599
dbVarLINC01599
ClinVarLINC01599
1000_GenomesLINC01599 
Exome Variant ServerLINC01599
ExAC (Exome Aggregation Consortium)LINC01599 (select the gene name)
Genetic variants : HAPMAP196913
Genomic Variants (DGV)LINC01599 [DGVbeta]
DECIPHER (Syndromes)14:50550369-50559361  
CONAN: Copy Number AnalysisLINC01599 
Mutations
ICGC Data PortalLINC01599 
TCGA Data PortalLINC01599 
Broad Tumor PortalLINC01599
OASIS PortalLINC01599 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01599
BioMutasearch LINC01599
DgiDB (Drug Gene Interaction Database)LINC01599
DoCM (Curated mutations)LINC01599 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01599 (select a term)
intoGenLINC01599
Cancer3DLINC01599(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01599
Genetic Testing Registry LINC01599
NextProtQ8WXQ3 [Medical]
TSGene196913
GENETestsLINC01599
Huge Navigator LINC01599 [HugePedia]
snp3D : Map Gene to Disease196913
BioCentury BCIQLINC01599
ClinGenLINC01599
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196913
Chemical/Pharm GKB GenePA165478562
Clinical trialLINC01599
Miscellaneous
canSAR (ICR)LINC01599 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01599
EVEXLINC01599
GoPubMedLINC01599
iHOPLINC01599
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:07:09 CEST 2017

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