Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01600 (long intergenic non-protein coding RNA 1600)

Identity

Alias_namesC6orf195
chromosome 6 open reading frame 195
Alias_symbol (synonym)FLJ31934
bA145H9.2
Other alias
HGNC (Hugo) LINC01600
LocusID (NCBI) 154386
Atlas_Id 76549
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 2621913 and ends at 2634603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01600   21600
Cards
Entrez_Gene (NCBI)LINC01600  154386  long intergenic non-protein coding RNA 1600
AliasesC6orf195; bA145H9.2
GeneCards (Weizmann)LINC01600
Ensembl hg19 (Hinxton)ENSG00000164385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164385 [Gene_View]  ENSG00000164385 [Sequence]  chr6:2621913-2634603 [Contig_View]  LINC01600 [Vega]
ICGC DataPortalENSG00000164385
TCGA cBioPortalLINC01600
AceView (NCBI)LINC01600
Genatlas (Paris)LINC01600
WikiGenes154386
SOURCE (Princeton)LINC01600
Genetics Home Reference (NIH)LINC01600
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01600  -     chr6:2621913-2634603 -  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01600  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01600 - 6p25.2 [CytoView hg19]  LINC01600 - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBILINC01600 [Mapview hg19]  LINC01600 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056496 BC104007 BC104008 BC104009
RefSeq transcript (Entrez)NM_152554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01600
Cluster EST : UnigeneHs.680574 [ NCBI ]
CGAP (NCI)Hs.680574
Alternative Splicing GalleryENSG00000164385
Gene ExpressionLINC01600 [ NCBI-GEO ]   LINC01600 [ EBI - ARRAY_EXPRESS ]   LINC01600 [ SEEK ]   LINC01600 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01600 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154386
GTEX Portal (Tissue expression)LINC01600
Human Protein AtlasENSG00000164385-LINC01600 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MT4
Splice isoforms : SwissVarQ96MT4
PhosPhoSitePlusQ96MT4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01600
DMDM Disease mutations154386
Blocks (Seattle)LINC01600
SuperfamilyQ96MT4
Human Protein Atlas [tissue]ENSG00000164385-LINC01600 [tissue]
Peptide AtlasQ96MT4
HPRD12870
IPIIPI00043366   
Protein Interaction databases
DIP (DOE-UCLA)Q96MT4
IntAct (EBI)Q96MT4
FunCoupENSG00000164385
BioGRIDLINC01600
STRING (EMBL)LINC01600
ZODIACLINC01600
Ontologies - Pathways
QuickGOQ96MT4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01600
Atlas of Cancer Signalling NetworkLINC01600
Wikipedia pathwaysLINC01600
Orthology - Evolution
OrthoDB154386
GeneTree (enSembl)ENSG00000164385
Phylogenetic Trees/Animal Genes : TreeFamLINC01600
HOVERGENQ96MT4
HOGENOMQ96MT4
Homologs : HomoloGeneLINC01600
Homology/Alignments : Family Browser (UCSC)LINC01600
Gene fusions - Rearrangements
Fusion : QuiverLINC01600
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01600 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01600
dbVarLINC01600
ClinVarLINC01600
1000_GenomesLINC01600 
Exome Variant ServerLINC01600
ExAC (Exome Aggregation Consortium)ENSG00000164385
GNOMAD BrowserENSG00000164385
Varsome BrowserLINC01600
Genetic variants : HAPMAP154386
Genomic Variants (DGV)LINC01600 [DGVbeta]
DECIPHERLINC01600 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01600 
Mutations
ICGC Data PortalLINC01600 
TCGA Data PortalLINC01600 
Broad Tumor PortalLINC01600
OASIS PortalLINC01600 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01600
BioMutasearch LINC01600
DgiDB (Drug Gene Interaction Database)LINC01600
DoCM (Curated mutations)LINC01600 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01600 (select a term)
intoGenLINC01600
Cancer3DLINC01600(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC01600
MedgenLINC01600
Genetic Testing Registry LINC01600
NextProtQ96MT4 [Medical]
TSGene154386
GENETestsLINC01600
Target ValidationLINC01600
Huge Navigator LINC01600 [HugePedia]
snp3D : Map Gene to Disease154386
BioCentury BCIQLINC01600
ClinGenLINC01600
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154386
Chemical/Pharm GKB GenePA134925567
Clinical trialLINC01600
Miscellaneous
canSAR (ICR)LINC01600 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01600
EVEXLINC01600
GoPubMedLINC01600
iHOPLINC01600
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:55:29 CEST 2018

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