Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01608 (long intergenic non-protein coding RNA 1608)

Identity

Alias_symbol (synonym)TCONS_00015136
Other alias-
HGNC (Hugo) LINC01608
LocusID (NCBI) 101927459
Atlas_Id 67141
Location 8q23.2  [Link to chromosome band 8q23]
Location_base_pair Starts at 110982950 and ends at 111027433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01608   51662
Cards
Entrez_Gene (NCBI)LINC01608  101927459  long intergenic non-protein coding RNA 1608
Aliases
GeneCards (Weizmann)LINC01608
Ensembl hg19 (Hinxton)ENSG00000253877 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253877 [Gene_View]  chr8:110982950-111027433 [Contig_View]  LINC01608 [Vega]
ICGC DataPortalENSG00000253877
TCGA cBioPortalLINC01608
AceView (NCBI)LINC01608
Genatlas (Paris)LINC01608
WikiGenes101927459
SOURCE (Princeton)LINC01608
Genetics Home Reference (NIH)LINC01608
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01608  -     chr8:110982950-111027433 -  8q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01608  -     8q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01608 - 8q23.2 [CytoView hg19]  LINC01608 - 8q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC01608 [Mapview hg19]  LINC01608 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA277595 DA407981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01608
Cluster EST : UnigeneHs.583635 [ NCBI ]
CGAP (NCI)Hs.583635
Alternative Splicing GalleryENSG00000253877
Gene ExpressionLINC01608 [ NCBI-GEO ]   LINC01608 [ EBI - ARRAY_EXPRESS ]   LINC01608 [ SEEK ]   LINC01608 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01608 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927459
GTEX Portal (Tissue expression)LINC01608
Human Protein AtlasENSG00000253877-LINC01608 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01608
DMDM Disease mutations101927459
Blocks (Seattle)LINC01608
Human Protein Atlas [tissue]ENSG00000253877-LINC01608 [tissue]
Protein Interaction databases
FunCoupENSG00000253877
BioGRIDLINC01608
STRING (EMBL)LINC01608
ZODIACLINC01608
Ontologies - Pathways
Huge Navigator LINC01608 [HugePedia]
snp3D : Map Gene to Disease101927459
BioCentury BCIQLINC01608
ClinGenLINC01608
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927459
Clinical trialLINC01608
Miscellaneous
canSAR (ICR)LINC01608 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01608
EVEXLINC01608
GoPubMedLINC01608
iHOPLINC01608
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:25 CET 2017

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