Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01611 (long intergenic non-protein coding RNA 1611)

Identity

Alias_symbol (synonym)RP1-90L14.1
TCONS_l2_00025430
Other alias
HGNC (Hugo) LINC01611
LocusID (NCBI) 105377880
Atlas_Id 77792
Location 6q14.3  [Link to chromosome band 6q14]
Location_base_pair Starts at 84421031 and ends at 84474929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01611   51791
Cards
Entrez_Gene (NCBI)LINC01611  105377880  long intergenic non-protein coding RNA 1611
AliasesTCONS_l2_00025430
GeneCards (Weizmann)LINC01611
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:84421031-84474929 [Contig_View]  LINC01611 [Vega]
TCGA cBioPortalLINC01611
AceView (NCBI)LINC01611
Genatlas (Paris)LINC01611
WikiGenes105377880
SOURCE (Princeton)LINC01611
Genetics Home Reference (NIH)LINC01611
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01611  -     chr6:84421031-84474929 -  6q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01611  -     6q14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01611 - 6q14.3 [CytoView hg19]  LINC01611 - 6q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC01611 [Mapview hg19]  LINC01611 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG194183 BG207527 BG214914
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01611
Cluster EST : UnigeneHs.171384 [ NCBI ]
CGAP (NCI)Hs.171384
Gene ExpressionLINC01611 [ NCBI-GEO ]   LINC01611 [ EBI - ARRAY_EXPRESS ]   LINC01611 [ SEEK ]   LINC01611 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01611 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105377880
GTEX Portal (Tissue expression)LINC01611
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01611
DMDM Disease mutations105377880
Blocks (Seattle)LINC01611
Protein Interaction databases
BioGRIDLINC01611
STRING (EMBL)LINC01611
ZODIACLINC01611
Ontologies - Pathways
Huge Navigator LINC01611 [HugePedia]
snp3D : Map Gene to Disease105377880
BioCentury BCIQLINC01611
ClinGenLINC01611
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105377880
Clinical trialLINC01611
Miscellaneous
canSAR (ICR)LINC01611 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01611
EVEXLINC01611
GoPubMedLINC01611
iHOPLINC01611
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:55:31 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.