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LINC01612 (long intergenic non-protein coding RNA 1612)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC01612
HGNC Alias symbRP11-789C1.1
TCONS_00008319
LocusID (NCBI) 101928223
Atlas_Id 77787
Location 4q33  [Link to chromosome band 4q33]
Location_base_pair Starts at 170226591 and ends at 170283722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01612   51837
Cards
Entrez_Gene (NCBI)LINC01612  101928223  long intergenic non-protein coding RNA 1612
Aliases
GeneCards (Weizmann)LINC01612
Ensembl hg19 (Hinxton)ENSG00000250266 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250266 [Gene_View]  ENSG00000250266 [Sequence]  chr4:170226591-170283722 [Contig_View]  LINC01612 [Vega]
ICGC DataPortalENSG00000250266
TCGA cBioPortalLINC01612
AceView (NCBI)LINC01612
Genatlas (Paris)LINC01612
WikiGenes101928223
SOURCE (Princeton)LINC01612
Genetics Home Reference (NIH)LINC01612
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01612  -     chr4:170226591-170283722 +  4q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01612  -     4q33   [Description]    (hg19-Feb_2009)
GoldenPathLINC01612 - 4q33 [CytoView hg19]  LINC01612 - 4q33 [CytoView hg38]
ImmunoBaseENSG00000250266
genome Data Viewer NCBILINC01612 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)CB163075
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01612
Alternative Splicing GalleryENSG00000250266
Gene ExpressionLINC01612 [ NCBI-GEO ]   LINC01612 [ EBI - ARRAY_EXPRESS ]   LINC01612 [ SEEK ]   LINC01612 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01612 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01612 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928223
GTEX Portal (Tissue expression)LINC01612
Human Protein AtlasENSG00000250266-LINC01612 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01612
DMDM Disease mutations101928223
Blocks (Seattle)LINC01612
Human Protein Atlas [tissue]ENSG00000250266-LINC01612 [tissue]
Protein Interaction databases
FunCoupENSG00000250266
BioGRIDLINC01612
STRING (EMBL)LINC01612
ZODIACLINC01612
Ontologies - Pathways
Huge Navigator LINC01612 [HugePedia]
snp3D : Map Gene to Disease101928223
BioCentury BCIQLINC01612
ClinGenLINC01612
Clinical trials, drugs, therapy
Protein Interactions : CTD101928223
Clinical trialLINC01612
Miscellaneous
canSAR (ICR)LINC01612 (select the gene name)
HarmonizomeLINC01612
DataMed IndexLINC01612
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01612
EVEXLINC01612
GoPubMedLINC01612
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:17:37 CEST 2020

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