Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01616 (long intergenic non-protein coding RNA 1616)


Alias (NCBI)n341006
HGNC (Hugo) LINC01616
HGNC Alias symbn341006
LocusID (NCBI) 106456574
Atlas_Id 77852
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 29980121 and ends at 29982393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01616   51900
Entrez_Gene (NCBI)LINC01616    long intergenic non-protein coding RNA 1616
GeneCards (Weizmann)LINC01616
Ensembl hg19 (Hinxton)ENSG00000261340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261340 [Gene_View]  ENSG00000261340 [Sequence]  chr11:29980121-29982393 [Contig_View]  LINC01616 [Vega]
ICGC DataPortalENSG00000261340
TCGA cBioPortalLINC01616
AceView (NCBI)LINC01616
Genatlas (Paris)LINC01616
SOURCE (Princeton)LINC01616
Genetics Home Reference (NIH)LINC01616
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01616  -     chr11:29980121-29982393 -  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01616  -     11p14.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC01616 - 11p14.1 [CytoView hg19]  LINC01616 - 11p14.1 [CytoView hg38]
genome Data Viewer NCBILINC01616 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA976649 AI693157 AI733348 AK095844 BE219832
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01616
Alternative Splicing GalleryENSG00000261340
Gene ExpressionLINC01616 [ NCBI-GEO ]   LINC01616 [ EBI - ARRAY_EXPRESS ]   LINC01616 [ SEEK ]   LINC01616 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01616 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01616 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)106456574
GTEX Portal (Tissue expression)LINC01616
Human Protein AtlasENSG00000261340-LINC01616 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01616
Blocks (Seattle)LINC01616
Human Protein Atlas [tissue]ENSG00000261340-LINC01616 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:02:51 CET 2020

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