Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01619 (long intergenic non-protein coding RNA 1619)

Identity

Alias_namesC12orf79
chromosome 12 open reading frame 79
Other alias
HGNC (Hugo) LINC01619
LocusID (NCBI) 256021
Atlas_Id 78045
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 91985087 and ends at 91985385 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01619   27409
Cards
Entrez_Gene (NCBI)LINC01619  256021  long intergenic non-protein coding RNA 1619
AliasesC12orf79
GeneCards (Weizmann)LINC01619
Ensembl hg19 (Hinxton)ENSG00000257242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257242 [Gene_View]  chr12:91985087-91985385 [Contig_View]  LINC01619 [Vega]
ICGC DataPortalENSG00000257242
TCGA cBioPortalLINC01619
AceView (NCBI)LINC01619
Genatlas (Paris)LINC01619
WikiGenes256021
SOURCE (Princeton)LINC01619
Genetics Home Reference (NIH)LINC01619
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01619  -     chr12:91985087-91985385 -  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01619  -     12q21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC01619 - 12q21.33 [CytoView hg19]  LINC01619 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBILINC01619 [Mapview hg19]  LINC01619 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086029 AK055439 BC029844 BC107595 BC118985
RefSeq transcript (Entrez)NM_001256373 NM_001256374 NM_001256375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01619
Cluster EST : UnigeneHs.651357 [ NCBI ]
CGAP (NCI)Hs.651357
Alternative Splicing GalleryENSG00000257242
Gene ExpressionLINC01619 [ NCBI-GEO ]   LINC01619 [ EBI - ARRAY_EXPRESS ]   LINC01619 [ SEEK ]   LINC01619 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01619 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256021
GTEX Portal (Tissue expression)LINC01619
Protein : pattern, domain, 3D structure
UniProt/SwissProtG3V211   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtG3V211  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProG3V211
Splice isoforms : SwissVarG3V211
PhosPhoSitePlusG3V211
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01619
DMDM Disease mutations256021
Blocks (Seattle)LINC01619
SuperfamilyG3V211
Human Protein AtlasENSG00000257242
Peptide AtlasG3V211
Protein Interaction databases
DIP (DOE-UCLA)G3V211
IntAct (EBI)G3V211
FunCoupENSG00000257242
BioGRIDLINC01619
STRING (EMBL)LINC01619
ZODIACLINC01619
Ontologies - Pathways
QuickGOG3V211
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01619
Atlas of Cancer Signalling NetworkLINC01619
Wikipedia pathwaysLINC01619
Orthology - Evolution
OrthoDB256021
GeneTree (enSembl)ENSG00000257242
Phylogenetic Trees/Animal Genes : TreeFamLINC01619
HOVERGENG3V211
HOGENOMG3V211
Homologs : HomoloGeneLINC01619
Homology/Alignments : Family Browser (UCSC)LINC01619
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01619 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01619
dbVarLINC01619
ClinVarLINC01619
1000_GenomesLINC01619 
Exome Variant ServerLINC01619
ExAC (Exome Aggregation Consortium)LINC01619 (select the gene name)
Genetic variants : HAPMAP256021
Genomic Variants (DGV)LINC01619 [DGVbeta]
DECIPHERLINC01619 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01619 
Mutations
ICGC Data PortalLINC01619 
TCGA Data PortalLINC01619 
Broad Tumor PortalLINC01619
OASIS PortalLINC01619 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01619
BioMutasearch LINC01619
DgiDB (Drug Gene Interaction Database)LINC01619
DoCM (Curated mutations)LINC01619 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01619 (select a term)
intoGenLINC01619
Cancer3DLINC01619(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01619
Genetic Testing Registry LINC01619
NextProtG3V211 [Medical]
TSGene256021
GENETestsLINC01619
Target ValidationLINC01619
Huge Navigator LINC01619 [HugePedia]
snp3D : Map Gene to Disease256021
BioCentury BCIQLINC01619
ClinGenLINC01619
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256021
Clinical trialLINC01619
Miscellaneous
canSAR (ICR)LINC01619 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01619
EVEXLINC01619
GoPubMedLINC01619
iHOPLINC01619
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:14:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.