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LINC01620 (long intergenic non-protein coding RNA 1620)

Identity

Alias_namesC20orf62
chromosome 20 open reading frame 62
Alias_symbol (synonym)dJ1013A22.3
Other alias
HGNC (Hugo) LINC01620
LocusID (NCBI) 140834
Atlas_Id 78038
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44461763 and ends at 44465344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC01620 (20q13.12) / PAFAH2 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01620   16195
Cards
Entrez_Gene (NCBI)LINC01620  140834  long intergenic non-protein coding RNA 1620
AliasesC20orf62; dJ1013A22.3
GeneCards (Weizmann)LINC01620
Ensembl hg19 (Hinxton)ENSG00000168746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168746 [Gene_View]  chr20:44461763-44465344 [Contig_View]  LINC01620 [Vega]
ICGC DataPortalENSG00000168746
TCGA cBioPortalLINC01620
AceView (NCBI)LINC01620
Genatlas (Paris)LINC01620
WikiGenes140834
SOURCE (Princeton)LINC01620
Genetics Home Reference (NIH)LINC01620
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01620  -     chr20:44461763-44465344 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01620  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC01620 - 20q13.12 [CytoView hg19]  LINC01620 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC01620 [Mapview hg19]  LINC01620 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030259 BX114953
RefSeq transcript (Entrez)NM_001287807
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01620
Cluster EST : UnigeneHs.357589 [ NCBI ]
CGAP (NCI)Hs.357589
Alternative Splicing GalleryENSG00000168746
Gene ExpressionLINC01620 [ NCBI-GEO ]   LINC01620 [ EBI - ARRAY_EXPRESS ]   LINC01620 [ SEEK ]   LINC01620 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01620 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140834
GTEX Portal (Tissue expression)LINC01620
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KN68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4KN68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4KN68
Splice isoforms : SwissVarQ4KN68
PhosPhoSitePlusQ4KN68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01620
DMDM Disease mutations140834
Blocks (Seattle)LINC01620
SuperfamilyQ4KN68
Human Protein AtlasENSG00000168746
Peptide AtlasQ4KN68
HPRD18555
IPIIPI00657844   IPI00299576   
Protein Interaction databases
DIP (DOE-UCLA)Q4KN68
IntAct (EBI)Q4KN68
FunCoupENSG00000168746
BioGRIDLINC01620
STRING (EMBL)LINC01620
ZODIACLINC01620
Ontologies - Pathways
QuickGOQ4KN68
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01620
Atlas of Cancer Signalling NetworkLINC01620
Wikipedia pathwaysLINC01620
Orthology - Evolution
OrthoDB140834
GeneTree (enSembl)ENSG00000168746
Phylogenetic Trees/Animal Genes : TreeFamLINC01620
HOVERGENQ4KN68
HOGENOMQ4KN68
Homologs : HomoloGeneLINC01620
Homology/Alignments : Family Browser (UCSC)LINC01620
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01620 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01620
dbVarLINC01620
ClinVarLINC01620
1000_GenomesLINC01620 
Exome Variant ServerLINC01620
ExAC (Exome Aggregation Consortium)LINC01620 (select the gene name)
Genetic variants : HAPMAP140834
Genomic Variants (DGV)LINC01620 [DGVbeta]
DECIPHERLINC01620 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01620 
Mutations
ICGC Data PortalLINC01620 
TCGA Data PortalLINC01620 
Broad Tumor PortalLINC01620
OASIS PortalLINC01620 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01620
BioMutasearch LINC01620
DgiDB (Drug Gene Interaction Database)LINC01620
DoCM (Curated mutations)LINC01620 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01620 (select a term)
intoGenLINC01620
Cancer3DLINC01620(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01620
Genetic Testing Registry LINC01620
NextProtQ4KN68 [Medical]
TSGene140834
GENETestsLINC01620
Target ValidationLINC01620
Huge Navigator LINC01620 [HugePedia]
snp3D : Map Gene to Disease140834
BioCentury BCIQLINC01620
ClinGenLINC01620
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140834
Chemical/Pharm GKB GenePA25773
Clinical trialLINC01620
Miscellaneous
canSAR (ICR)LINC01620 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01620
EVEXLINC01620
GoPubMedLINC01620
iHOPLINC01620
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:59:37 CEST 2017

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