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LINC01622 (long intergenic non-protein coding RNA 1622)

Identity

Alias_symbol (synonym)TCONS_00011202
Other alias-
HGNC (Hugo) LINC01622
LocusID (NCBI) 285768
Atlas_Id 77854
Location 6p25.3  [Link to chromosome band 6p25]
Location_base_pair Starts at 961003 and ends at 1101332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01622   27768
Cards
Entrez_Gene (NCBI)LINC01622  285768  long intergenic non-protein coding RNA 1622
Aliases
GeneCards (Weizmann)LINC01622
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:961003-1101332 [Contig_View]  LINC01622 [Vega]
TCGA cBioPortalLINC01622
AceView (NCBI)LINC01622
Genatlas (Paris)LINC01622
WikiGenes285768
SOURCE (Princeton)LINC01622
Genetics Home Reference (NIH)LINC01622
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01622  -     chr6:961003-1101332 -  6p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01622  -     6p25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01622 - 6p25.3 [CytoView hg19]  LINC01622 - 6p25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01622 [Mapview hg19]  LINC01622 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037855 BC050075 BC117448 BC126314
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01622
Cluster EST : UnigeneHs.209463 [ NCBI ]
CGAP (NCI)Hs.209463
Gene ExpressionLINC01622 [ NCBI-GEO ]   LINC01622 [ EBI - ARRAY_EXPRESS ]   LINC01622 [ SEEK ]   LINC01622 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01622 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285768
GTEX Portal (Tissue expression)LINC01622
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01622
DMDM Disease mutations285768
Blocks (Seattle)LINC01622
Protein Interaction databases
BioGRIDLINC01622
STRING (EMBL)LINC01622
ZODIACLINC01622
Ontologies - Pathways
Huge Navigator LINC01622 [HugePedia]
snp3D : Map Gene to Disease285768
BioCentury BCIQLINC01622
ClinGenLINC01622
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285768
Clinical trialLINC01622
Miscellaneous
canSAR (ICR)LINC01622 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01622
EVEXLINC01622
GoPubMedLINC01622
iHOPLINC01622
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:55:33 CEST 2018

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