Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01623 (long intergenic non-protein coding RNA 1623)

Identity

Other alias-
HGNC (Hugo) LINC01623
LocusID (NCBI) 401242
Atlas_Id 77855
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28859625 and ends at 28863677 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01623   52050
Cards
Entrez_Gene (NCBI)LINC01623  401242  long intergenic non-protein coding RNA 1623
Aliases
GeneCards (Weizmann)LINC01623
Ensembl hg19 (Hinxton)ENSG00000225595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225595 [Gene_View]  ENSG00000225595 [Sequence]  chr6:28859625-28863677 [Contig_View]  LINC01623 [Vega]
ICGC DataPortalENSG00000225595
TCGA cBioPortalLINC01623
AceView (NCBI)LINC01623
Genatlas (Paris)LINC01623
WikiGenes401242
SOURCE (Princeton)LINC01623
Genetics Home Reference (NIH)LINC01623
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01623  -     chr6:28859625-28863677 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01623  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01623 - 6p22.1 [CytoView hg19]  LINC01623 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC01623 [Mapview hg19]  LINC01623 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055503 AK291391
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LINC01623
Cluster EST : UnigeneHs.448285 [ NCBI ]
CGAP (NCI)Hs.448285
Alternative Splicing GalleryENSG00000225595
Gene ExpressionLINC01623 [ NCBI-GEO ]   LINC01623 [ EBI - ARRAY_EXPRESS ]   LINC01623 [ SEEK ]   LINC01623 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01623 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401242
GTEX Portal (Tissue expression)LINC01623
Human Protein AtlasENSG00000225595-LINC01623 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01623
DMDM Disease mutations401242
Blocks (Seattle)LINC01623
Human Protein Atlas [tissue]ENSG00000225595-LINC01623 [tissue]
Protein Interaction databases
FunCoupENSG00000225595
BioGRIDLINC01623
STRING (EMBL)LINC01623
ZODIACLINC01623
Ontologies - Pathways
Huge Navigator LINC01623 [HugePedia]
snp3D : Map Gene to Disease401242
BioCentury BCIQLINC01623
ClinGenLINC01623
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401242
Clinical trialLINC01623
Miscellaneous
canSAR (ICR)LINC01623 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01623
EVEXLINC01623
GoPubMedLINC01623
iHOPLINC01623
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:55:33 CEST 2018

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