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LINC01624 (long intergenic non-protein coding RNA 1624)

Identity

Alias_symbol (synonym)TCONS_00011425
Other alias-
HGNC (Hugo) LINC01624
LocusID (NCBI) 401289
Atlas_Id 77856
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 170272474 and ends at 170279466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01624   52051
Cards
Entrez_Gene (NCBI)LINC01624  401289  long intergenic non-protein coding RNA 1624
Aliases
GeneCards (Weizmann)LINC01624
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:170272474-170279466 [Contig_View]  LINC01624 [Vega]
TCGA cBioPortalLINC01624
AceView (NCBI)LINC01624
Genatlas (Paris)LINC01624
WikiGenes401289
SOURCE (Princeton)LINC01624
Genetics Home Reference (NIH)LINC01624
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01624  -     chr6:170272474-170279466 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01624  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLINC01624 - 6q27 [CytoView hg19]  LINC01624 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILINC01624 [Mapview hg19]  LINC01624 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI498491 AK095441 BX088681
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_187553
Consensus coding sequences : CCDS (NCBI)LINC01624
Cluster EST : UnigeneHs.651962 [ NCBI ]
CGAP (NCI)Hs.651962
Gene ExpressionLINC01624 [ NCBI-GEO ]   LINC01624 [ EBI - ARRAY_EXPRESS ]   LINC01624 [ SEEK ]   LINC01624 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01624 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401289
GTEX Portal (Tissue expression)LINC01624
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01624
DMDM Disease mutations401289
Blocks (Seattle)LINC01624
Protein Interaction databases
BioGRIDLINC01624
STRING (EMBL)LINC01624
ZODIACLINC01624
Ontologies - Pathways
Huge Navigator LINC01624 [HugePedia]
snp3D : Map Gene to Disease401289
BioCentury BCIQLINC01624
ClinGenLINC01624
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401289
Clinical trialLINC01624
Miscellaneous
canSAR (ICR)LINC01624 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01624
EVEXLINC01624
GoPubMedLINC01624
iHOPLINC01624
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:55:34 CEST 2018

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