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LINC01625 (long intergenic non-protein coding RNA 1625)

Identity

Alias_symbol (synonym)TCONS_00011139
Other alias-
HGNC (Hugo) LINC01625
LocusID (NCBI) 645434
Atlas_Id 77857
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 139468995 and ends at 139474596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01625   52052
Cards
Entrez_Gene (NCBI)LINC01625  645434  long intergenic non-protein coding RNA 1625
Aliases
GeneCards (Weizmann)LINC01625
Ensembl hg19 (Hinxton)ENSG00000238099 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238099 [Gene_View]  ENSG00000238099 [Sequence]  chr6:139468995-139474596 [Contig_View]  LINC01625 [Vega]
ICGC DataPortalENSG00000238099
TCGA cBioPortalLINC01625
AceView (NCBI)LINC01625
Genatlas (Paris)LINC01625
WikiGenes645434
SOURCE (Princeton)LINC01625
Genetics Home Reference (NIH)LINC01625
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01625  -     chr6:139468995-139474596 -  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01625  -     6q24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01625 - 6q24.1 [CytoView hg19]  LINC01625 - 6q24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01625 [Mapview hg19]  LINC01625 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123801 BX108499
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01625
Cluster EST : UnigeneHs.666240 [ NCBI ]
CGAP (NCI)Hs.666240
Alternative Splicing GalleryENSG00000238099
Gene ExpressionLINC01625 [ NCBI-GEO ]   LINC01625 [ EBI - ARRAY_EXPRESS ]   LINC01625 [ SEEK ]   LINC01625 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01625 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645434
GTEX Portal (Tissue expression)LINC01625
Human Protein AtlasENSG00000238099-LINC01625 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01625
DMDM Disease mutations645434
Blocks (Seattle)LINC01625
Human Protein Atlas [tissue]ENSG00000238099-LINC01625 [tissue]
Protein Interaction databases
FunCoupENSG00000238099
BioGRIDLINC01625
STRING (EMBL)LINC01625
ZODIACLINC01625
Ontologies - Pathways
Huge Navigator LINC01625 [HugePedia]
snp3D : Map Gene to Disease645434
BioCentury BCIQLINC01625
ClinGenLINC01625
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645434
Clinical trialLINC01625
Miscellaneous
canSAR (ICR)LINC01625 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01625
EVEXLINC01625
GoPubMedLINC01625
iHOPLINC01625
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:55:34 CEST 2018

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