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LINC01628 (long intergenic non-protein coding RNA 1628)

Identity

Other alias-
HGNC (Hugo) LINC01628
LocusID (NCBI) 102724321
Atlas_Id 56672
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 66921511 and ends at 66922490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01628   52259
Cards
Entrez_Gene (NCBI)LINC01628  102724321  long intergenic non-protein coding RNA 1628
Aliases
GeneCards (Weizmann)LINC01628
Ensembl hg19 (Hinxton)ENSG00000232688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232688 [Gene_View]  ENSG00000232688 [Sequence]  chr2:66921511-66922490 [Contig_View]  LINC01628 [Vega]
ICGC DataPortalENSG00000232688
TCGA cBioPortalLINC01628
AceView (NCBI)LINC01628
Genatlas (Paris)LINC01628
WikiGenes102724321
SOURCE (Princeton)LINC01628
Genetics Home Reference (NIH)LINC01628
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01628  -     chr2:66921511-66922490 -  2p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01628  -     2p14   [Description]    (hg19-Feb_2009)
EnsemblLINC01628 - 2p14 [CytoView hg19]  LINC01628 - 2p14 [CytoView hg38]
Mapping of homologs : NCBILINC01628 [Mapview hg19]  LINC01628 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI699358 BX103810
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01628
Cluster EST : UnigeneHs.146803 [ NCBI ]
CGAP (NCI)Hs.146803
Alternative Splicing GalleryENSG00000232688
Gene ExpressionLINC01628 [ NCBI-GEO ]   LINC01628 [ EBI - ARRAY_EXPRESS ]   LINC01628 [ SEEK ]   LINC01628 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01628 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724321
GTEX Portal (Tissue expression)LINC01628
Human Protein AtlasENSG00000232688-LINC01628 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01628
DMDM Disease mutations102724321
Blocks (Seattle)LINC01628
Human Protein Atlas [tissue]ENSG00000232688-LINC01628 [tissue]
Protein Interaction databases
FunCoupENSG00000232688
BioGRIDLINC01628
STRING (EMBL)LINC01628
ZODIACLINC01628
Ontologies - Pathways
Huge Navigator LINC01628 [HugePedia]
snp3D : Map Gene to Disease102724321
BioCentury BCIQLINC01628
ClinGenLINC01628
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724321
Clinical trialLINC01628
Miscellaneous
canSAR (ICR)LINC01628 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01628
EVEXLINC01628
GoPubMedLINC01628
iHOPLINC01628
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:16:47 CET 2018

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