Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01630 (long intergenic non-protein coding RNA 1630)

Identity

Other alias-
HGNC (Hugo) LINC01630
LocusID (NCBI) 100287225
Atlas_Id 78397
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 51392042 and ends at 51562469 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01630   52295
Cards
Entrez_Gene (NCBI)LINC01630  100287225  long intergenic non-protein coding RNA 1630
Aliases
GeneCards (Weizmann)LINC01630
Ensembl hg19 (Hinxton)ENSG00000227115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227115 [Gene_View]  chr18:51392042-51562469 [Contig_View]  LINC01630 [Vega]
ICGC DataPortalENSG00000227115
TCGA cBioPortalLINC01630
AceView (NCBI)LINC01630
Genatlas (Paris)LINC01630
WikiGenes100287225
SOURCE (Princeton)LINC01630
Genetics Home Reference (NIH)LINC01630
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01630  -     chr18:51392042-51562469 +  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01630  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01630 - 18q21.2 [CytoView hg19]  LINC01630 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01630 [Mapview hg19]  LINC01630 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094936 AK294844
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01630
Cluster EST : UnigeneHs.715487 [ NCBI ]
CGAP (NCI)Hs.715487
Alternative Splicing GalleryENSG00000227115
Gene ExpressionLINC01630 [ NCBI-GEO ]   LINC01630 [ EBI - ARRAY_EXPRESS ]   LINC01630 [ SEEK ]   LINC01630 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01630 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287225
GTEX Portal (Tissue expression)LINC01630
Human Protein AtlasENSG00000227115-LINC01630 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01630
DMDM Disease mutations100287225
Blocks (Seattle)LINC01630
Human Protein Atlas [tissue]ENSG00000227115-LINC01630 [tissue]
Protein Interaction databases
FunCoupENSG00000227115
BioGRIDLINC01630
STRING (EMBL)LINC01630
ZODIACLINC01630
Ontologies - Pathways
Huge Navigator LINC01630 [HugePedia]
snp3D : Map Gene to Disease100287225
BioCentury BCIQLINC01630
ClinGenLINC01630
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287225
Clinical trialLINC01630
Miscellaneous
canSAR (ICR)LINC01630 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01630
EVEXLINC01630
GoPubMedLINC01630
iHOPLINC01630
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:56:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.