Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01638 (long intergenic non-protein coding RNA 1638)

Identity

Other alias-
HGNC (Hugo) LINC01638
LocusID (NCBI) 105372978
Atlas_Id 79945
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 27221347 and ends at 27224727 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01638   52425
Cards
Entrez_Gene (NCBI)LINC01638  105372978  long intergenic non-protein coding RNA 1638
Aliases
GeneCards (Weizmann)LINC01638
Ensembl hg19 (Hinxton)ENSG00000233521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233521 [Gene_View]  chr22:27221347-27224727 [Contig_View]  LINC01638 [Vega]
ICGC DataPortalENSG00000233521
TCGA cBioPortalLINC01638
AceView (NCBI)LINC01638
Genatlas (Paris)LINC01638
WikiGenes105372978
SOURCE (Princeton)LINC01638
Genetics Home Reference (NIH)LINC01638
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01638  -     chr22:27221347-27224727 -  22q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01638  -     22q12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01638 - 22q12.1 [CytoView hg19]  LINC01638 - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBILINC01638 [Mapview hg19]  LINC01638 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001350812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01638
Alternative Splicing GalleryENSG00000233521
Gene ExpressionLINC01638 [ NCBI-GEO ]   LINC01638 [ EBI - ARRAY_EXPRESS ]   LINC01638 [ SEEK ]   LINC01638 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01638 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372978
GTEX Portal (Tissue expression)LINC01638
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01638
DMDM Disease mutations105372978
Blocks (Seattle)LINC01638
Human Protein AtlasENSG00000233521
Protein Interaction databases
FunCoupENSG00000233521
BioGRIDLINC01638
STRING (EMBL)LINC01638
ZODIACLINC01638
Ontologies - Pathways
Huge Navigator LINC01638 [HugePedia]
snp3D : Map Gene to Disease105372978
BioCentury BCIQLINC01638
ClinGenLINC01638
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372978
Clinical trialLINC01638
Miscellaneous
canSAR (ICR)LINC01638 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01638
EVEXLINC01638
GoPubMedLINC01638
iHOPLINC01638
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:15:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.