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LINC01645 (long intergenic non-protein coding RNA 1645)

Identity

Other alias-
HGNC (Hugo) LINC01645
LocusID (NCBI) 102724661
Atlas_Id 79437
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 177351586 and ends at 177366458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01645   52432
Cards
Entrez_Gene (NCBI)LINC01645  102724661  long intergenic non-protein coding RNA 1645
Aliases
GeneCards (Weizmann)LINC01645
Ensembl hg19 (Hinxton)ENSG00000224968 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224968 [Gene_View]  chr1:177351586-177366458 [Contig_View]  LINC01645 [Vega]
ICGC DataPortalENSG00000224968
TCGA cBioPortalLINC01645
AceView (NCBI)LINC01645
Genatlas (Paris)LINC01645
WikiGenes102724661
SOURCE (Princeton)LINC01645
Genetics Home Reference (NIH)LINC01645
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01645  -     chr1:177351586-177366458 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01645  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01645 - 1q25.2 [CytoView hg19]  LINC01645 - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBILINC01645 [Mapview hg19]  LINC01645 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI141063 BX094421
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01645
Cluster EST : UnigeneHs.146628 [ NCBI ]
CGAP (NCI)Hs.146628
Alternative Splicing GalleryENSG00000224968
Gene ExpressionLINC01645 [ NCBI-GEO ]   LINC01645 [ EBI - ARRAY_EXPRESS ]   LINC01645 [ SEEK ]   LINC01645 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01645 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724661
GTEX Portal (Tissue expression)LINC01645
Human Protein AtlasENSG00000224968-LINC01645 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01645
DMDM Disease mutations102724661
Blocks (Seattle)LINC01645
Human Protein Atlas [tissue]ENSG00000224968-LINC01645 [tissue]
Protein Interaction databases
FunCoupENSG00000224968
BioGRIDLINC01645
STRING (EMBL)LINC01645
ZODIACLINC01645
Ontologies - Pathways
Huge Navigator LINC01645 [HugePedia]
snp3D : Map Gene to Disease102724661
BioCentury BCIQLINC01645
ClinGenLINC01645
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724661
Clinical trialLINC01645
Miscellaneous
canSAR (ICR)LINC01645 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01645
EVEXLINC01645
GoPubMedLINC01645
iHOPLINC01645
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:01 CET 2017

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