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LINC01646 (long intergenic non-protein coding RNA 1646)

Identity

Other alias-
HGNC (Hugo) LINC01646
LocusID (NCBI) 105376679
Atlas_Id 79359
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 4571487 and ends at 4583704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01646   52433
Cards
Entrez_Gene (NCBI)LINC01646  105376679  long intergenic non-protein coding RNA 1646
Aliases
GeneCards (Weizmann)LINC01646
Ensembl hg19 (Hinxton)ENSG00000232596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232596 [Gene_View]  chr1:4571487-4583704 [Contig_View]  LINC01646 [Vega]
ICGC DataPortalENSG00000232596
TCGA cBioPortalLINC01646
AceView (NCBI)LINC01646
Genatlas (Paris)LINC01646
WikiGenes105376679
SOURCE (Princeton)LINC01646
Genetics Home Reference (NIH)LINC01646
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01646  -     chr1:4571487-4583704 +  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01646  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblLINC01646 - 1p36.32 [CytoView hg19]  LINC01646 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBILINC01646 [Mapview hg19]  LINC01646 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01646
Alternative Splicing GalleryENSG00000232596
Gene ExpressionLINC01646 [ NCBI-GEO ]   LINC01646 [ EBI - ARRAY_EXPRESS ]   LINC01646 [ SEEK ]   LINC01646 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01646 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376679
GTEX Portal (Tissue expression)LINC01646
Human Protein AtlasENSG00000232596-LINC01646 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01646
DMDM Disease mutations105376679
Blocks (Seattle)LINC01646
Human Protein Atlas [tissue]ENSG00000232596-LINC01646 [tissue]
Protein Interaction databases
FunCoupENSG00000232596
BioGRIDLINC01646
STRING (EMBL)LINC01646
ZODIACLINC01646
Ontologies - Pathways
Huge Navigator LINC01646 [HugePedia]
snp3D : Map Gene to Disease105376679
BioCentury BCIQLINC01646
ClinGenLINC01646
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376679
Clinical trialLINC01646
Miscellaneous
canSAR (ICR)LINC01646 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01646
EVEXLINC01646
GoPubMedLINC01646
iHOPLINC01646
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:44 CET 2017

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