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LINC01647 (long intergenic non-protein coding RNA 1647)

Identity

Other alias-
HGNC (Hugo) LINC01647
LocusID (NCBI) 101929181
Atlas_Id 79792
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11609531 and ends at 11613354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01647   52434
Cards
Entrez_Gene (NCBI)LINC01647  101929181  long intergenic non-protein coding RNA 1647
Aliases
GeneCards (Weizmann)LINC01647
Ensembl hg19 (Hinxton)ENSG00000235643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235643 [Gene_View]  chr1:11609531-11613354 [Contig_View]  LINC01647 [Vega]
ICGC DataPortalENSG00000235643
TCGA cBioPortalLINC01647
AceView (NCBI)LINC01647
Genatlas (Paris)LINC01647
WikiGenes101929181
SOURCE (Princeton)LINC01647
Genetics Home Reference (NIH)LINC01647
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01647  -     chr1:11609531-11613354 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01647  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblLINC01647 - 1p36.22 [CytoView hg19]  LINC01647 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBILINC01647 [Mapview hg19]  LINC01647 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039491
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01647
Cluster EST : UnigeneHs.568616 [ NCBI ]
CGAP (NCI)Hs.568616
Alternative Splicing GalleryENSG00000235643
Gene ExpressionLINC01647 [ NCBI-GEO ]   LINC01647 [ EBI - ARRAY_EXPRESS ]   LINC01647 [ SEEK ]   LINC01647 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01647 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929181
GTEX Portal (Tissue expression)LINC01647
Human Protein AtlasENSG00000235643-LINC01647 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01647
DMDM Disease mutations101929181
Blocks (Seattle)LINC01647
Human Protein Atlas [tissue]ENSG00000235643-LINC01647 [tissue]
Protein Interaction databases
FunCoupENSG00000235643
BioGRIDLINC01647
STRING (EMBL)LINC01647
ZODIACLINC01647
Ontologies - Pathways
Huge Navigator LINC01647 [HugePedia]
snp3D : Map Gene to Disease101929181
BioCentury BCIQLINC01647
ClinGenLINC01647
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929181
Clinical trialLINC01647
Miscellaneous
canSAR (ICR)LINC01647 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01647
EVEXLINC01647
GoPubMedLINC01647
iHOPLINC01647
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:01 CET 2017

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