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LINC01648 (long intergenic non-protein coding RNA 1648)

Identity

Other alias-
HGNC (Hugo) LINC01648
LocusID (NCBI) 101929406
Atlas_Id 79581
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 30013952 and ends at 30037612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01648   52435
Cards
Entrez_Gene (NCBI)LINC01648  101929406  long intergenic non-protein coding RNA 1648
Aliases
GeneCards (Weizmann)LINC01648
Ensembl hg19 (Hinxton)ENSG00000233399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233399 [Gene_View]  chr1:30013952-30037612 [Contig_View]  LINC01648 [Vega]
ICGC DataPortalENSG00000233399
TCGA cBioPortalLINC01648
AceView (NCBI)LINC01648
Genatlas (Paris)LINC01648
WikiGenes101929406
SOURCE (Princeton)LINC01648
Genetics Home Reference (NIH)LINC01648
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01648  -     chr1:30013952-30037612 -  1p35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01648  -     1p35.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01648 - 1p35.2 [CytoView hg19]  LINC01648 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBILINC01648 [Mapview hg19]  LINC01648 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042538
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01648
Cluster EST : UnigeneHs.639413 [ NCBI ]
CGAP (NCI)Hs.639413
Alternative Splicing GalleryENSG00000233399
Gene ExpressionLINC01648 [ NCBI-GEO ]   LINC01648 [ EBI - ARRAY_EXPRESS ]   LINC01648 [ SEEK ]   LINC01648 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01648 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929406
GTEX Portal (Tissue expression)LINC01648
Human Protein AtlasENSG00000233399-LINC01648 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01648
DMDM Disease mutations101929406
Blocks (Seattle)LINC01648
Human Protein Atlas [tissue]ENSG00000233399-LINC01648 [tissue]
Protein Interaction databases
FunCoupENSG00000233399
BioGRIDLINC01648
STRING (EMBL)LINC01648
ZODIACLINC01648
Ontologies - Pathways
Huge Navigator LINC01648 [HugePedia]
snp3D : Map Gene to Disease101929406
BioCentury BCIQLINC01648
ClinGenLINC01648
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929406
Clinical trialLINC01648
Miscellaneous
canSAR (ICR)LINC01648 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01648
EVEXLINC01648
GoPubMedLINC01648
iHOPLINC01648
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:44 CET 2017

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