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LINC01649 (long intergenic non-protein coding RNA 1649)

Identity

Other alias-
HGNC (Hugo) LINC01649
LocusID (NCBI) 101928995
Atlas_Id 80013
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 115919376 and ends at 115925908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01649   52436
Cards
Entrez_Gene (NCBI)LINC01649  101928995  long intergenic non-protein coding RNA 1649
Aliases
GeneCards (Weizmann)LINC01649
Ensembl hg19 (Hinxton)ENSG00000228127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228127 [Gene_View]  chr1:115919376-115925908 [Contig_View]  LINC01649 [Vega]
ICGC DataPortalENSG00000228127
TCGA cBioPortalLINC01649
AceView (NCBI)LINC01649
Genatlas (Paris)LINC01649
WikiGenes101928995
SOURCE (Princeton)LINC01649
Genetics Home Reference (NIH)LINC01649
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01649  -     chr1:115919376-115925908 +  1p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01649  -     1p13.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01649 - 1p13.1 [CytoView hg19]  LINC01649 - 1p13.1 [CytoView hg38]
Mapping of homologs : NCBILINC01649 [Mapview hg19]  LINC01649 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043254
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01649
Cluster EST : UnigeneHs.559119 [ NCBI ]
CGAP (NCI)Hs.559119
Alternative Splicing GalleryENSG00000228127
Gene ExpressionLINC01649 [ NCBI-GEO ]   LINC01649 [ EBI - ARRAY_EXPRESS ]   LINC01649 [ SEEK ]   LINC01649 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01649 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928995
GTEX Portal (Tissue expression)LINC01649
Human Protein AtlasENSG00000228127-LINC01649 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01649
DMDM Disease mutations101928995
Blocks (Seattle)LINC01649
Human Protein Atlas [tissue]ENSG00000228127-LINC01649 [tissue]
Protein Interaction databases
FunCoupENSG00000228127
BioGRIDLINC01649
STRING (EMBL)LINC01649
ZODIACLINC01649
Ontologies - Pathways
Huge Navigator LINC01649 [HugePedia]
snp3D : Map Gene to Disease101928995
BioCentury BCIQLINC01649
ClinGenLINC01649
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928995
Clinical trialLINC01649
Miscellaneous
canSAR (ICR)LINC01649 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01649
EVEXLINC01649
GoPubMedLINC01649
iHOPLINC01649
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:02 CET 2017

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