Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01650 (long intergenic non-protein coding RNA 1650)

Identity

Other alias-
HGNC (Hugo) LINC01650
LocusID (NCBI) 101928169
Atlas_Id 80043
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 95351251 and ends at 95352107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01650   52437
Cards
Entrez_Gene (NCBI)LINC01650  101928169  long intergenic non-protein coding RNA 1650
Aliases
GeneCards (Weizmann)LINC01650
Ensembl hg19 (Hinxton)ENSG00000230434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230434 [Gene_View]  chr1:95351251-95352107 [Contig_View]  LINC01650 [Vega]
ICGC DataPortalENSG00000230434
TCGA cBioPortalLINC01650
AceView (NCBI)LINC01650
Genatlas (Paris)LINC01650
WikiGenes101928169
SOURCE (Princeton)LINC01650
Genetics Home Reference (NIH)LINC01650
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01650  -     chr1:95351251-95352107 -  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01650  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01650 - 1p21.3 [CytoView hg19]  LINC01650 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBILINC01650 [Mapview hg19]  LINC01650 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01650
Alternative Splicing GalleryENSG00000230434
Gene ExpressionLINC01650 [ NCBI-GEO ]   LINC01650 [ EBI - ARRAY_EXPRESS ]   LINC01650 [ SEEK ]   LINC01650 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01650 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928169
GTEX Portal (Tissue expression)LINC01650
Human Protein AtlasENSG00000230434-LINC01650 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01650
DMDM Disease mutations101928169
Blocks (Seattle)LINC01650
Human Protein Atlas [tissue]ENSG00000230434-LINC01650 [tissue]
Protein Interaction databases
FunCoupENSG00000230434
BioGRIDLINC01650
STRING (EMBL)LINC01650
ZODIACLINC01650
Ontologies - Pathways
Huge Navigator LINC01650 [HugePedia]
snp3D : Map Gene to Disease101928169
BioCentury BCIQLINC01650
ClinGenLINC01650
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928169
Clinical trialLINC01650
Miscellaneous
canSAR (ICR)LINC01650 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01650
EVEXLINC01650
GoPubMedLINC01650
iHOPLINC01650
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:02 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.