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LINC01653 (long intergenic non-protein coding RNA 1653)

Identity

Other alias-
HGNC (Hugo) LINC01653
LocusID (NCBI) 101929631
Atlas_Id 80018
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 218043505 and ends at 218059140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01653   52441
Cards
Entrez_Gene (NCBI)LINC01653  101929631  long intergenic non-protein coding RNA 1653
Aliases
GeneCards (Weizmann)LINC01653
Ensembl hg19 (Hinxton)ENSG00000232100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232100 [Gene_View]  chr1:218043505-218059140 [Contig_View]  LINC01653 [Vega]
ICGC DataPortalENSG00000232100
TCGA cBioPortalLINC01653
AceView (NCBI)LINC01653
Genatlas (Paris)LINC01653
WikiGenes101929631
SOURCE (Princeton)LINC01653
Genetics Home Reference (NIH)LINC01653
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01653  -     chr1:218043505-218059140 +  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01653  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblLINC01653 - 1q41 [CytoView hg19]  LINC01653 - 1q41 [CytoView hg38]
Mapping of homologs : NCBILINC01653 [Mapview hg19]  LINC01653 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039113
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01653
Cluster EST : UnigeneHs.407614 [ NCBI ]
CGAP (NCI)Hs.407614
Alternative Splicing GalleryENSG00000232100
Gene ExpressionLINC01653 [ NCBI-GEO ]   LINC01653 [ EBI - ARRAY_EXPRESS ]   LINC01653 [ SEEK ]   LINC01653 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01653 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929631
GTEX Portal (Tissue expression)LINC01653
Human Protein AtlasENSG00000232100-LINC01653 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01653
DMDM Disease mutations101929631
Blocks (Seattle)LINC01653
Human Protein Atlas [tissue]ENSG00000232100-LINC01653 [tissue]
Protein Interaction databases
FunCoupENSG00000232100
BioGRIDLINC01653
STRING (EMBL)LINC01653
ZODIACLINC01653
Ontologies - Pathways
Huge Navigator LINC01653 [HugePedia]
snp3D : Map Gene to Disease101929631
BioCentury BCIQLINC01653
ClinGenLINC01653
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929631
Clinical trialLINC01653
Miscellaneous
canSAR (ICR)LINC01653 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01653
EVEXLINC01653
GoPubMedLINC01653
iHOPLINC01653
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:02 CET 2017

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