Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01654 (long intergenic non-protein coding RNA 1654)

Identity

Other alias-
HGNC (Hugo) LINC01654
LocusID (NCBI) 101927876
Atlas_Id 80232
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 18065657 and ends at 18074411 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01654   52442
Cards
Entrez_Gene (NCBI)LINC01654  101927876  long intergenic non-protein coding RNA 1654
Aliases
GeneCards (Weizmann)LINC01654
Ensembl hg19 (Hinxton)ENSG00000261781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261781 [Gene_View]  chr1:18065657-18074411 [Contig_View]  LINC01654 [Vega]
ICGC DataPortalENSG00000261781
TCGA cBioPortalLINC01654
AceView (NCBI)LINC01654
Genatlas (Paris)LINC01654
WikiGenes101927876
SOURCE (Princeton)LINC01654
Genetics Home Reference (NIH)LINC01654
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01654  -     chr1:18065657-18074411 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01654  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01654 - 1p36.13 [CytoView hg19]  LINC01654 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBILINC01654 [Mapview hg19]  LINC01654 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035225
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01654
Cluster EST : UnigeneHs.522954 [ NCBI ]
CGAP (NCI)Hs.522954
Alternative Splicing GalleryENSG00000261781
Gene ExpressionLINC01654 [ NCBI-GEO ]   LINC01654 [ EBI - ARRAY_EXPRESS ]   LINC01654 [ SEEK ]   LINC01654 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01654 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927876
GTEX Portal (Tissue expression)LINC01654
Human Protein AtlasENSG00000261781-LINC01654 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01654
DMDM Disease mutations101927876
Blocks (Seattle)LINC01654
Human Protein Atlas [tissue]ENSG00000261781-LINC01654 [tissue]
Protein Interaction databases
FunCoupENSG00000261781
BioGRIDLINC01654
STRING (EMBL)LINC01654
ZODIACLINC01654
Ontologies - Pathways
Huge Navigator LINC01654 [HugePedia]
snp3D : Map Gene to Disease101927876
BioCentury BCIQLINC01654
ClinGenLINC01654
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927876
Clinical trialLINC01654
Miscellaneous
canSAR (ICR)LINC01654 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01654
EVEXLINC01654
GoPubMedLINC01654
iHOPLINC01654
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:45 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.