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LINC01657 (long intergenic non-protein coding RNA 1657)

Identity

Other alias-
HGNC (Hugo) LINC01657
LocusID (NCBI) 101928751
Atlas_Id 79444
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 175877343 and ends at 175880464 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01657   52445
Cards
Entrez_Gene (NCBI)LINC01657  101928751  long intergenic non-protein coding RNA 1657
Aliases
GeneCards (Weizmann)LINC01657
Ensembl hg19 (Hinxton)ENSG00000224718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224718 [Gene_View]  chr1:175877343-175880464 [Contig_View]  LINC01657 [Vega]
ICGC DataPortalENSG00000224718
TCGA cBioPortalLINC01657
AceView (NCBI)LINC01657
Genatlas (Paris)LINC01657
WikiGenes101928751
SOURCE (Princeton)LINC01657
Genetics Home Reference (NIH)LINC01657
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01657  -     chr1:175877343-175880464 +  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01657  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01657 - 1q25.1 [CytoView hg19]  LINC01657 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBILINC01657 [Mapview hg19]  LINC01657 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031108
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01657
Alternative Splicing GalleryENSG00000224718
Gene ExpressionLINC01657 [ NCBI-GEO ]   LINC01657 [ EBI - ARRAY_EXPRESS ]   LINC01657 [ SEEK ]   LINC01657 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01657 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928751
GTEX Portal (Tissue expression)LINC01657
Human Protein AtlasENSG00000224718-LINC01657 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01657
DMDM Disease mutations101928751
Blocks (Seattle)LINC01657
Human Protein Atlas [tissue]ENSG00000224718-LINC01657 [tissue]
Protein Interaction databases
FunCoupENSG00000224718
BioGRIDLINC01657
STRING (EMBL)LINC01657
ZODIACLINC01657
Ontologies - Pathways
Huge Navigator LINC01657 [HugePedia]
snp3D : Map Gene to Disease101928751
BioCentury BCIQLINC01657
ClinGenLINC01657
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928751
Clinical trialLINC01657
Miscellaneous
canSAR (ICR)LINC01657 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01657
EVEXLINC01657
GoPubMedLINC01657
iHOPLINC01657
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:03 CET 2017

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