Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01658 (long intergenic non-protein coding RNA 1658)

Identity

Other alias-
HGNC (Hugo) LINC01658
LocusID (NCBI) 388882
Atlas_Id 79707
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23462082 and ends at 23486980 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01658   52446
Cards
Entrez_Gene (NCBI)LINC01658  388882  long intergenic non-protein coding RNA 1658
Aliases
GeneCards (Weizmann)LINC01658
Ensembl hg19 (Hinxton)ENSG00000178248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178248 [Gene_View]  chr22:23462082-23486980 [Contig_View]  LINC01658 [Vega]
ICGC DataPortalENSG00000178248
TCGA cBioPortalLINC01658
AceView (NCBI)LINC01658
Genatlas (Paris)LINC01658
WikiGenes388882
SOURCE (Princeton)LINC01658
Genetics Home Reference (NIH)LINC01658
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01658  -     chr22:23462082-23486980 -  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01658  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblLINC01658 - 22q11.23 [CytoView hg19]  LINC01658 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBILINC01658 [Mapview hg19]  LINC01658 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA868867 BC036910
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187632
Consensus coding sequences : CCDS (NCBI)LINC01658
Cluster EST : UnigeneHs.542766 [ NCBI ]
CGAP (NCI)Hs.542766
Alternative Splicing GalleryENSG00000178248
Gene ExpressionLINC01658 [ NCBI-GEO ]   LINC01658 [ EBI - ARRAY_EXPRESS ]   LINC01658 [ SEEK ]   LINC01658 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01658 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388882
GTEX Portal (Tissue expression)LINC01658
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N402
Splice isoforms : SwissVarQ8N402
PhosPhoSitePlusQ8N402
Domains : Interpro (EBI)Ret-finger_pr-like_3_antisense   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01658
DMDM Disease mutations388882
Blocks (Seattle)LINC01658
SuperfamilyQ8N402
Human Protein AtlasENSG00000178248
Peptide AtlasQ8N402
IPIIPI00166586   
Protein Interaction databases
DIP (DOE-UCLA)Q8N402
IntAct (EBI)Q8N402
FunCoupENSG00000178248
BioGRIDLINC01658
STRING (EMBL)LINC01658
ZODIACLINC01658
Ontologies - Pathways
QuickGOQ8N402
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC01658
Atlas of Cancer Signalling NetworkLINC01658
Wikipedia pathwaysLINC01658
Orthology - Evolution
OrthoDB388882
GeneTree (enSembl)ENSG00000178248
Phylogenetic Trees/Animal Genes : TreeFamLINC01658
HOVERGENQ8N402
HOGENOMQ8N402
Homologs : HomoloGeneLINC01658
Homology/Alignments : Family Browser (UCSC)LINC01658
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC01658 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC01658
dbVarLINC01658
ClinVarLINC01658
1000_GenomesLINC01658 
Exome Variant ServerLINC01658
ExAC (Exome Aggregation Consortium)LINC01658 (select the gene name)
Genetic variants : HAPMAP388882
Genomic Variants (DGV)LINC01658 [DGVbeta]
DECIPHERLINC01658 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC01658 
Mutations
ICGC Data PortalLINC01658 
TCGA Data PortalLINC01658 
Broad Tumor PortalLINC01658
OASIS PortalLINC01658 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC01658
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC01658
DgiDB (Drug Gene Interaction Database)LINC01658
DoCM (Curated mutations)LINC01658 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC01658 (select a term)
intoGenLINC01658
Cancer3DLINC01658(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC01658
Genetic Testing Registry LINC01658
NextProtQ8N402 [Medical]
TSGene388882
GENETestsLINC01658
Target ValidationLINC01658
Huge Navigator LINC01658 [HugePedia]
snp3D : Map Gene to Disease388882
BioCentury BCIQLINC01658
ClinGenLINC01658
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388882
Clinical trialLINC01658
Miscellaneous
canSAR (ICR)LINC01658 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01658
EVEXLINC01658
GoPubMedLINC01658
iHOPLINC01658
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:15:02 CEST 2017

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