Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01660 (long intergenic non-protein coding RNA 1660)

Identity

Other alias-
HGNC (Hugo) LINC01660
LocusID (NCBI) 729461
Atlas_Id 80028
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18361830 and ends at 18386526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01660   52448
Cards
Entrez_Gene (NCBI)LINC01660  729461  long intergenic non-protein coding RNA 1660
Aliases
GeneCards (Weizmann)LINC01660
Ensembl hg19 (Hinxton)ENSG00000274044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274044 [Gene_View]  chr22:18361830-18386526 [Contig_View]  LINC01660 [Vega]
ICGC DataPortalENSG00000274044
TCGA cBioPortalLINC01660
AceView (NCBI)LINC01660
Genatlas (Paris)LINC01660
WikiGenes729461
SOURCE (Princeton)LINC01660
Genetics Home Reference (NIH)LINC01660
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01660  -     chr22:18361830-18386526 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01660  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblLINC01660 - 22q11.21 [CytoView hg19]  LINC01660 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBILINC01660 [Mapview hg19]  LINC01660 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129567
RefSeq transcript (Entrez)NM_201401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01660
Cluster EST : UnigeneHs.629498 [ NCBI ]
CGAP (NCI)Hs.629498
Alternative Splicing GalleryENSG00000274044
Gene ExpressionLINC01660 [ NCBI-GEO ]   LINC01660 [ EBI - ARRAY_EXPRESS ]   LINC01660 [ SEEK ]   LINC01660 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01660 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729461
GTEX Portal (Tissue expression)LINC01660
Human Protein AtlasENSG00000274044-LINC01660 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01660
DMDM Disease mutations729461
Blocks (Seattle)LINC01660
Human Protein Atlas [tissue]ENSG00000274044-LINC01660 [tissue]
IPIIPI00879337   
Protein Interaction databases
FunCoupENSG00000274044
BioGRIDLINC01660
STRING (EMBL)LINC01660
ZODIACLINC01660
Ontologies - Pathways
Huge Navigator LINC01660 [HugePedia]
snp3D : Map Gene to Disease729461
BioCentury BCIQLINC01660
ClinGenLINC01660
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729461
Clinical trialLINC01660
Miscellaneous
canSAR (ICR)LINC01660 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01660
EVEXLINC01660
GoPubMedLINC01660
iHOPLINC01660
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:53 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.