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LINC01661 (long intergenic non-protein coding RNA 1661)

Identity

Other alias-
HGNC (Hugo) LINC01661
LocusID (NCBI) 105378889
Atlas_Id 79597
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 106818239 and ends at 106838193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01661   52449
Cards
Entrez_Gene (NCBI)LINC01661  105378889  long intergenic non-protein coding RNA 1661
Aliases
GeneCards (Weizmann)LINC01661
Ensembl hg19 (Hinxton)ENSG00000237460 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237460 [Gene_View]  chr1:106818239-106838193 [Contig_View]  LINC01661 [Vega]
ICGC DataPortalENSG00000237460
TCGA cBioPortalLINC01661
AceView (NCBI)LINC01661
Genatlas (Paris)LINC01661
WikiGenes105378889
SOURCE (Princeton)LINC01661
Genetics Home Reference (NIH)LINC01661
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01661  -     chr1:106818239-106838193 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01661  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01661 - 1p13.3 [CytoView hg19]  LINC01661 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC01661 [Mapview hg19]  LINC01661 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU854483
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01661
Cluster EST : UnigeneHs.568674 [ NCBI ]
CGAP (NCI)Hs.568674
Alternative Splicing GalleryENSG00000237460
Gene ExpressionLINC01661 [ NCBI-GEO ]   LINC01661 [ EBI - ARRAY_EXPRESS ]   LINC01661 [ SEEK ]   LINC01661 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01661 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378889
GTEX Portal (Tissue expression)LINC01661
Human Protein AtlasENSG00000237460-LINC01661 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01661
DMDM Disease mutations105378889
Blocks (Seattle)LINC01661
Human Protein Atlas [tissue]ENSG00000237460-LINC01661 [tissue]
Protein Interaction databases
FunCoupENSG00000237460
BioGRIDLINC01661
STRING (EMBL)LINC01661
ZODIACLINC01661
Ontologies - Pathways
Huge Navigator LINC01661 [HugePedia]
snp3D : Map Gene to Disease105378889
BioCentury BCIQLINC01661
ClinGenLINC01661
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378889
Clinical trialLINC01661
Miscellaneous
canSAR (ICR)LINC01661 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01661
EVEXLINC01661
GoPubMedLINC01661
iHOPLINC01661
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:03 CET 2017

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