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LINC01672 (long intergenic non-protein coding RNA 1672)

Identity

Other alias-
HGNC (Hugo) LINC01672
LocusID (NCBI) 100505887
Atlas_Id 79502
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6724745 and ends at 6730012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01672   52460
Cards
Entrez_Gene (NCBI)LINC01672  100505887  long intergenic non-protein coding RNA 1672
Aliases
GeneCards (Weizmann)LINC01672
Ensembl hg19 (Hinxton)ENSG00000228750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228750 [Gene_View]  chr1:6724745-6730012 [Contig_View]  LINC01672 [Vega]
ICGC DataPortalENSG00000228750
TCGA cBioPortalLINC01672
AceView (NCBI)LINC01672
Genatlas (Paris)LINC01672
WikiGenes100505887
SOURCE (Princeton)LINC01672
Genetics Home Reference (NIH)LINC01672
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01672  -     chr1:6724745-6730012 +  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01672  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblLINC01672 - 1p36.31 [CytoView hg19]  LINC01672 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBILINC01672 [Mapview hg19]  LINC01672 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA398864 BG216966
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01672
Cluster EST : UnigeneHs.250839 [ NCBI ]
CGAP (NCI)Hs.250839
Alternative Splicing GalleryENSG00000228750
Gene ExpressionLINC01672 [ NCBI-GEO ]   LINC01672 [ EBI - ARRAY_EXPRESS ]   LINC01672 [ SEEK ]   LINC01672 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01672 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505887
GTEX Portal (Tissue expression)LINC01672
Human Protein AtlasENSG00000228750-LINC01672 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01672
DMDM Disease mutations100505887
Blocks (Seattle)LINC01672
Human Protein Atlas [tissue]ENSG00000228750-LINC01672 [tissue]
Protein Interaction databases
FunCoupENSG00000228750
BioGRIDLINC01672
STRING (EMBL)LINC01672
ZODIACLINC01672
Ontologies - Pathways
Huge Navigator LINC01672 [HugePedia]
snp3D : Map Gene to Disease100505887
BioCentury BCIQLINC01672
ClinGenLINC01672
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505887
Clinical trialLINC01672
Miscellaneous
canSAR (ICR)LINC01672 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01672
EVEXLINC01672
GoPubMedLINC01672
iHOPLINC01672
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:03 CET 2017

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