Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01675 (long intergenic non-protein coding RNA 1675)

Identity

Other alias-
HGNC (Hugo) LINC01675
LocusID (NCBI) 105371590
Atlas_Id 79738
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 166475772 and ends at 166490039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01675   52463
Cards
Entrez_Gene (NCBI)LINC01675  105371590  long intergenic non-protein coding RNA 1675
Aliases
GeneCards (Weizmann)LINC01675
Ensembl hg19 (Hinxton)ENSG00000234142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234142 [Gene_View]  chr1:166475772-166490039 [Contig_View]  LINC01675 [Vega]
ICGC DataPortalENSG00000234142
TCGA cBioPortalLINC01675
AceView (NCBI)LINC01675
Genatlas (Paris)LINC01675
WikiGenes105371590
SOURCE (Princeton)LINC01675
Genetics Home Reference (NIH)LINC01675
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01675  -     chr1:166475772-166490039 -  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01675  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01675 - 1q24.1 [CytoView hg19]  LINC01675 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBILINC01675 [Mapview hg19]  LINC01675 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG527071
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01675
Cluster EST : UnigeneHs.575926 [ NCBI ]
CGAP (NCI)Hs.575926
Alternative Splicing GalleryENSG00000234142
Gene ExpressionLINC01675 [ NCBI-GEO ]   LINC01675 [ EBI - ARRAY_EXPRESS ]   LINC01675 [ SEEK ]   LINC01675 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01675 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371590
GTEX Portal (Tissue expression)LINC01675
Human Protein AtlasENSG00000234142-LINC01675 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01675
DMDM Disease mutations105371590
Blocks (Seattle)LINC01675
Human Protein Atlas [tissue]ENSG00000234142-LINC01675 [tissue]
Protein Interaction databases
FunCoupENSG00000234142
BioGRIDLINC01675
STRING (EMBL)LINC01675
ZODIACLINC01675
Ontologies - Pathways
Huge Navigator LINC01675 [HugePedia]
snp3D : Map Gene to Disease105371590
BioCentury BCIQLINC01675
ClinGenLINC01675
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371590
Clinical trialLINC01675
Miscellaneous
canSAR (ICR)LINC01675 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01675
EVEXLINC01675
GoPubMedLINC01675
iHOPLINC01675
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.