Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01677 (long intergenic non-protein coding RNA 1677)

Identity

Other alias-
HGNC (Hugo) LINC01677
LocusID (NCBI) 105378884
Atlas_Id 78949
Location 1p21.1  [Link to chromosome band 1p21]
Location_base_pair Starts at 105927624 and ends at 106028253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01677   52465
Cards
Entrez_Gene (NCBI)LINC01677  105378884  long intergenic non-protein coding RNA 1677
Aliases
GeneCards (Weizmann)LINC01677
Ensembl hg19 (Hinxton)ENSG00000233047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233047 [Gene_View]  chr1:105927624-106028253 [Contig_View]  LINC01677 [Vega]
ICGC DataPortalENSG00000233047
TCGA cBioPortalLINC01677
AceView (NCBI)LINC01677
Genatlas (Paris)LINC01677
WikiGenes105378884
SOURCE (Princeton)LINC01677
Genetics Home Reference (NIH)LINC01677
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01677  -     chr1:105927624-106028253 -  1p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01677  -     1p21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01677 - 1p21.1 [CytoView hg19]  LINC01677 - 1p21.1 [CytoView hg38]
Mapping of homologs : NCBILINC01677 [Mapview hg19]  LINC01677 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI147975 DB023795
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01677
Cluster EST : UnigeneHs.568533 [ NCBI ]
CGAP (NCI)Hs.568533
Alternative Splicing GalleryENSG00000233047
Gene ExpressionLINC01677 [ NCBI-GEO ]   LINC01677 [ EBI - ARRAY_EXPRESS ]   LINC01677 [ SEEK ]   LINC01677 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01677 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378884
GTEX Portal (Tissue expression)LINC01677
Human Protein AtlasENSG00000233047-LINC01677 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01677
DMDM Disease mutations105378884
Blocks (Seattle)LINC01677
Human Protein Atlas [tissue]ENSG00000233047-LINC01677 [tissue]
Protein Interaction databases
FunCoupENSG00000233047
BioGRIDLINC01677
STRING (EMBL)LINC01677
ZODIACLINC01677
Ontologies - Pathways
Huge Navigator LINC01677 [HugePedia]
snp3D : Map Gene to Disease105378884
BioCentury BCIQLINC01677
ClinGenLINC01677
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378884
Clinical trialLINC01677
Miscellaneous
canSAR (ICR)LINC01677 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01677
EVEXLINC01677
GoPubMedLINC01677
iHOPLINC01677
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:49 CET 2017

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