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LINC01680 (long intergenic non-protein coding RNA 1680)

Identity

Other alias-
HGNC (Hugo) LINC01680
LocusID (NCBI) 105371660
Atlas_Id 79413
Location 1q31.2  [Link to chromosome band 1q31]
Location_base_pair Starts at 191221159 and ends at 191228498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01680   52467
Cards
Entrez_Gene (NCBI)LINC01680  105371660  long intergenic non-protein coding RNA 1680
Aliases
GeneCards (Weizmann)LINC01680
Ensembl hg19 (Hinxton)ENSG00000233882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233882 [Gene_View]  chr1:191221159-191228498 [Contig_View]  LINC01680 [Vega]
ICGC DataPortalENSG00000233882
TCGA cBioPortalLINC01680
AceView (NCBI)LINC01680
Genatlas (Paris)LINC01680
WikiGenes105371660
SOURCE (Princeton)LINC01680
Genetics Home Reference (NIH)LINC01680
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01680  -     chr1:191221159-191228498 -  1q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01680  -     1q31.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01680 - 1q31.2 [CytoView hg19]  LINC01680 - 1q31.2 [CytoView hg38]
Mapping of homologs : NCBILINC01680 [Mapview hg19]  LINC01680 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX105282
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01680
Cluster EST : UnigeneHs.127094 [ NCBI ]
CGAP (NCI)Hs.127094
Alternative Splicing GalleryENSG00000233882
Gene ExpressionLINC01680 [ NCBI-GEO ]   LINC01680 [ EBI - ARRAY_EXPRESS ]   LINC01680 [ SEEK ]   LINC01680 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01680 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371660
GTEX Portal (Tissue expression)LINC01680
Human Protein AtlasENSG00000233882-LINC01680 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01680
DMDM Disease mutations105371660
Blocks (Seattle)LINC01680
Human Protein Atlas [tissue]ENSG00000233882-LINC01680 [tissue]
Protein Interaction databases
FunCoupENSG00000233882
BioGRIDLINC01680
STRING (EMBL)LINC01680
ZODIACLINC01680
Ontologies - Pathways
Huge Navigator LINC01680 [HugePedia]
snp3D : Map Gene to Disease105371660
BioCentury BCIQLINC01680
ClinGenLINC01680
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371660
Clinical trialLINC01680
Miscellaneous
canSAR (ICR)LINC01680 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01680
EVEXLINC01680
GoPubMedLINC01680
iHOPLINC01680
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:04 CET 2017

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