Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01682 (long intergenic non-protein coding RNA 1682)

Identity

Other alias-
HGNC (Hugo) LINC01682
LocusID (NCBI) 101927504
Atlas_Id 80054
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229884859 and ends at 229892036 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01682   52470
Cards
Entrez_Gene (NCBI)LINC01682  101927504  long intergenic non-protein coding RNA 1682
Aliases
GeneCards (Weizmann)LINC01682
Ensembl hg19 (Hinxton)ENSG00000227043 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227043 [Gene_View]  chr1:229884859-229892036 [Contig_View]  LINC01682 [Vega]
ICGC DataPortalENSG00000227043
TCGA cBioPortalLINC01682
AceView (NCBI)LINC01682
Genatlas (Paris)LINC01682
WikiGenes101927504
SOURCE (Princeton)LINC01682
Genetics Home Reference (NIH)LINC01682
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01682  -     chr1:229884859-229892036 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01682  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblLINC01682 - 1q42.13 [CytoView hg19]  LINC01682 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBILINC01682 [Mapview hg19]  LINC01682 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01682
Alternative Splicing GalleryENSG00000227043
Gene ExpressionLINC01682 [ NCBI-GEO ]   LINC01682 [ EBI - ARRAY_EXPRESS ]   LINC01682 [ SEEK ]   LINC01682 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01682 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927504
GTEX Portal (Tissue expression)LINC01682
Human Protein AtlasENSG00000227043-LINC01682 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01682
DMDM Disease mutations101927504
Blocks (Seattle)LINC01682
Human Protein Atlas [tissue]ENSG00000227043-LINC01682 [tissue]
Protein Interaction databases
FunCoupENSG00000227043
BioGRIDLINC01682
STRING (EMBL)LINC01682
ZODIACLINC01682
Ontologies - Pathways
Huge Navigator LINC01682 [HugePedia]
snp3D : Map Gene to Disease101927504
BioCentury BCIQLINC01682
ClinGenLINC01682
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927504
Clinical trialLINC01682
Miscellaneous
canSAR (ICR)LINC01682 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01682
EVEXLINC01682
GoPubMedLINC01682
iHOPLINC01682
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:04 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.