Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01684 (long intergenic non-protein coding RNA 1684)

Identity

Alias_symbol (synonym)lnc-JAM2-6
Other alias
HGNC (Hugo) LINC01684
LocusID (NCBI) 105372751
Atlas_Id 79242
Location 21q21.2  [Link to chromosome band 21q21]
Location_base_pair Starts at 24428740 and ends at 24547942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01684   52472
Cards
Entrez_Gene (NCBI)LINC01684  105372751  long intergenic non-protein coding RNA 1684
Aliaseslnc-JAM2-6
GeneCards (Weizmann)LINC01684
Ensembl hg19 (Hinxton)ENSG00000237484 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237484 [Gene_View]  chr21:24428740-24547942 [Contig_View]  LINC01684 [Vega]
ICGC DataPortalENSG00000237484
TCGA cBioPortalLINC01684
AceView (NCBI)LINC01684
Genatlas (Paris)LINC01684
WikiGenes105372751
SOURCE (Princeton)LINC01684
Genetics Home Reference (NIH)LINC01684
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01684  -     chr21:24428740-24547942 +  21q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01684  -     21q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01684 - 21q21.2 [CytoView hg19]  LINC01684 - 21q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01684 [Mapview hg19]  LINC01684 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124194 BX538159 DB125182
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01684
Cluster EST : UnigeneHs.652040 [ NCBI ]
CGAP (NCI)Hs.652040
Alternative Splicing GalleryENSG00000237484
Gene ExpressionLINC01684 [ NCBI-GEO ]   LINC01684 [ EBI - ARRAY_EXPRESS ]   LINC01684 [ SEEK ]   LINC01684 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01684 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372751
GTEX Portal (Tissue expression)LINC01684
Human Protein AtlasENSG00000237484-LINC01684 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01684
DMDM Disease mutations105372751
Blocks (Seattle)LINC01684
Human Protein Atlas [tissue]ENSG00000237484-LINC01684 [tissue]
Protein Interaction databases
FunCoupENSG00000237484
BioGRIDLINC01684
STRING (EMBL)LINC01684
ZODIACLINC01684
Ontologies - Pathways
Huge Navigator LINC01684 [HugePedia]
snp3D : Map Gene to Disease105372751
BioCentury BCIQLINC01684
ClinGenLINC01684
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372751
Clinical trialLINC01684
Miscellaneous
canSAR (ICR)LINC01684 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01684
EVEXLINC01684
GoPubMedLINC01684
iHOPLINC01684
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:02 CET 2017

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