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LINC01685 (long intergenic non-protein coding RNA 1685)

Identity

Other alias-
HGNC (Hugo) LINC01685
LocusID (NCBI) 105378656
Atlas_Id 78814
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38475196 and ends at 38476484 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01685   52473
Cards
Entrez_Gene (NCBI)LINC01685  105378656  long intergenic non-protein coding RNA 1685
Aliases
GeneCards (Weizmann)LINC01685
Ensembl hg19 (Hinxton)ENSG00000238063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238063 [Gene_View]  chr1:38475196-38476484 [Contig_View]  LINC01685 [Vega]
ICGC DataPortalENSG00000238063
TCGA cBioPortalLINC01685
AceView (NCBI)LINC01685
Genatlas (Paris)LINC01685
WikiGenes105378656
SOURCE (Princeton)LINC01685
Genetics Home Reference (NIH)LINC01685
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01685  -     chr1:38475196-38476484 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01685  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01685 - 1p34.3 [CytoView hg19]  LINC01685 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBILINC01685 [Mapview hg19]  LINC01685 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA983907 BX115803
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01685
Cluster EST : UnigeneHs.128924 [ NCBI ]
CGAP (NCI)Hs.128924
Alternative Splicing GalleryENSG00000238063
Gene ExpressionLINC01685 [ NCBI-GEO ]   LINC01685 [ EBI - ARRAY_EXPRESS ]   LINC01685 [ SEEK ]   LINC01685 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01685 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378656
GTEX Portal (Tissue expression)LINC01685
Human Protein AtlasENSG00000238063-LINC01685 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01685
DMDM Disease mutations105378656
Blocks (Seattle)LINC01685
Human Protein Atlas [tissue]ENSG00000238063-LINC01685 [tissue]
Protein Interaction databases
FunCoupENSG00000238063
BioGRIDLINC01685
STRING (EMBL)LINC01685
ZODIACLINC01685
Ontologies - Pathways
Huge Navigator LINC01685 [HugePedia]
snp3D : Map Gene to Disease105378656
BioCentury BCIQLINC01685
ClinGenLINC01685
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378656
Clinical trialLINC01685
Miscellaneous
canSAR (ICR)LINC01685 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01685
EVEXLINC01685
GoPubMedLINC01685
iHOPLINC01685
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:04 CET 2017

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