Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC01688 (long intergenic non-protein coding RNA 1688)


Alias (NCBI)-
HGNC (Hugo) LINC01688
LocusID (NCBI) 105371644
Atlas_Id 79033
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 182712862 and ends at 182714541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC01688   52475
Entrez_Gene (NCBI)LINC01688    long intergenic non-protein coding RNA 1688
GeneCards (Weizmann)LINC01688
Ensembl hg19 (Hinxton)ENSG00000227181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227181 [Gene_View]  ENSG00000227181 [Sequence]  chr1:182712862-182714541 [Contig_View]  LINC01688 [Vega]
ICGC DataPortalENSG00000227181
TCGA cBioPortalLINC01688
AceView (NCBI)LINC01688
Genatlas (Paris)LINC01688
SOURCE (Princeton)LINC01688
Genetics Home Reference (NIH)LINC01688
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01688  -     chr1:182712862-182714541 +  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01688  -     1q25.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC01688 - 1q25.3 [CytoView hg19]  LINC01688 - 1q25.3 [CytoView hg38]
genome Data Viewer NCBILINC01688 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA460184 AF508910
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01688
Alternative Splicing GalleryENSG00000227181
Gene ExpressionLINC01688 [ NCBI-GEO ]   LINC01688 [ EBI - ARRAY_EXPRESS ]   LINC01688 [ SEEK ]   LINC01688 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01688 [ Firebrowse - Broad ]
GenevisibleExpression of LINC01688 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105371644
GTEX Portal (Tissue expression)LINC01688
Human Protein AtlasENSG00000227181-LINC01688 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01688
Blocks (Seattle)LINC01688
Human Protein Atlas [tissue]ENSG00000227181-LINC01688 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:03:02 CET 2020

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