Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01688 (long intergenic non-protein coding RNA 1688)

Identity

Other alias-
HGNC (Hugo) LINC01688
LocusID (NCBI) 105371644
Atlas_Id 79033
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 182712862 and ends at 182714541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01688   52475
Cards
Entrez_Gene (NCBI)LINC01688  105371644  long intergenic non-protein coding RNA 1688
Aliases
GeneCards (Weizmann)LINC01688
Ensembl hg19 (Hinxton)ENSG00000227181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227181 [Gene_View]  chr1:182712862-182714541 [Contig_View]  LINC01688 [Vega]
ICGC DataPortalENSG00000227181
TCGA cBioPortalLINC01688
AceView (NCBI)LINC01688
Genatlas (Paris)LINC01688
WikiGenes105371644
SOURCE (Princeton)LINC01688
Genetics Home Reference (NIH)LINC01688
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01688  -     chr1:182712862-182714541 +  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01688  -     1q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01688 - 1q25.3 [CytoView hg19]  LINC01688 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC01688 [Mapview hg19]  LINC01688 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA460184 AF508910
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01688
Cluster EST : UnigeneHs.496952 [ NCBI ]
CGAP (NCI)Hs.496952
Alternative Splicing GalleryENSG00000227181
Gene ExpressionLINC01688 [ NCBI-GEO ]   LINC01688 [ EBI - ARRAY_EXPRESS ]   LINC01688 [ SEEK ]   LINC01688 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01688 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371644
GTEX Portal (Tissue expression)LINC01688
Human Protein AtlasENSG00000227181-LINC01688 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01688
DMDM Disease mutations105371644
Blocks (Seattle)LINC01688
Human Protein Atlas [tissue]ENSG00000227181-LINC01688 [tissue]
Protein Interaction databases
FunCoupENSG00000227181
BioGRIDLINC01688
STRING (EMBL)LINC01688
ZODIACLINC01688
Ontologies - Pathways
Huge Navigator LINC01688 [HugePedia]
snp3D : Map Gene to Disease105371644
BioCentury BCIQLINC01688
ClinGenLINC01688
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371644
Clinical trialLINC01688
Miscellaneous
canSAR (ICR)LINC01688 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01688
EVEXLINC01688
GoPubMedLINC01688
iHOPLINC01688
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:05 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.