Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC01689 (long intergenic non-protein coding RNA 1689)

Identity

Alias_symbol (synonym)AP000469.2
Other alias-
HGNC (Hugo) LINC01689
LocusID (NCBI) 101927869
Atlas_Id 80247
Location 21q21.2  [Link to chromosome band 21q21]
Location_base_pair Starts at 24304550 and ends at 24321377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01689   52476
Cards
Entrez_Gene (NCBI)LINC01689  101927869  long intergenic non-protein coding RNA 1689
Aliases
GeneCards (Weizmann)LINC01689
Ensembl hg19 (Hinxton)ENSG00000224832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224832 [Gene_View]  chr21:24304550-24321377 [Contig_View]  LINC01689 [Vega]
ICGC DataPortalENSG00000224832
TCGA cBioPortalLINC01689
AceView (NCBI)LINC01689
Genatlas (Paris)LINC01689
WikiGenes101927869
SOURCE (Princeton)LINC01689
Genetics Home Reference (NIH)LINC01689
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01689  -     chr21:24304550-24321377 -  21q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01689  -     21q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01689 - 21q21.2 [CytoView hg19]  LINC01689 - 21q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01689 [Mapview hg19]  LINC01689 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043533
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01689
Cluster EST : UnigeneHs.555591 [ NCBI ]
CGAP (NCI)Hs.555591
Alternative Splicing GalleryENSG00000224832
Gene ExpressionLINC01689 [ NCBI-GEO ]   LINC01689 [ EBI - ARRAY_EXPRESS ]   LINC01689 [ SEEK ]   LINC01689 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01689 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927869
GTEX Portal (Tissue expression)LINC01689
Human Protein AtlasENSG00000224832-LINC01689 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01689
DMDM Disease mutations101927869
Blocks (Seattle)LINC01689
Human Protein Atlas [tissue]ENSG00000224832-LINC01689 [tissue]
Protein Interaction databases
FunCoupENSG00000224832
BioGRIDLINC01689
STRING (EMBL)LINC01689
ZODIACLINC01689
Ontologies - Pathways
Huge Navigator LINC01689 [HugePedia]
snp3D : Map Gene to Disease101927869
BioCentury BCIQLINC01689
ClinGenLINC01689
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927869
Clinical trialLINC01689
Miscellaneous
canSAR (ICR)LINC01689 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01689
EVEXLINC01689
GoPubMedLINC01689
iHOPLINC01689
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:02 CET 2017

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