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LINC01696 (long intergenic non-protein coding RNA 1696)

Identity

Other alias-
HGNC (Hugo) LINC01696
LocusID (NCBI) 105372897
Atlas_Id 79721
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209325456 and ends at 209328532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01696   52484
Cards
Entrez_Gene (NCBI)LINC01696  105372897  long intergenic non-protein coding RNA 1696
Aliases
GeneCards (Weizmann)LINC01696
Ensembl hg19 (Hinxton)ENSG00000227940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227940 [Gene_View]  chr1:209325456-209328532 [Contig_View]  LINC01696 [Vega]
ICGC DataPortalENSG00000227940
TCGA cBioPortalLINC01696
AceView (NCBI)LINC01696
Genatlas (Paris)LINC01696
WikiGenes105372897
SOURCE (Princeton)LINC01696
Genetics Home Reference (NIH)LINC01696
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01696  -     chr1:209325456-209328532 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01696  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01696 - 1q32.2 [CytoView hg19]  LINC01696 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBILINC01696 [Mapview hg19]  LINC01696 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW270068 BX119711
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01696
Cluster EST : UnigeneHs.116154 [ NCBI ]
CGAP (NCI)Hs.116154
Alternative Splicing GalleryENSG00000227940
Gene ExpressionLINC01696 [ NCBI-GEO ]   LINC01696 [ EBI - ARRAY_EXPRESS ]   LINC01696 [ SEEK ]   LINC01696 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01696 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372897
GTEX Portal (Tissue expression)LINC01696
Human Protein AtlasENSG00000227940-LINC01696 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01696
DMDM Disease mutations105372897
Blocks (Seattle)LINC01696
Human Protein Atlas [tissue]ENSG00000227940-LINC01696 [tissue]
Protein Interaction databases
FunCoupENSG00000227940
BioGRIDLINC01696
STRING (EMBL)LINC01696
ZODIACLINC01696
Ontologies - Pathways
Huge Navigator LINC01696 [HugePedia]
snp3D : Map Gene to Disease105372897
BioCentury BCIQLINC01696
ClinGenLINC01696
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372897
Clinical trialLINC01696
Miscellaneous
canSAR (ICR)LINC01696 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01696
EVEXLINC01696
GoPubMedLINC01696
iHOPLINC01696
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:54 CET 2017

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