Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC01708 (long intergenic non-protein coding RNA 1708)

Identity

Other alias-
HGNC (Hugo) LINC01708
LocusID (NCBI) 101928270
Atlas_Id 79177
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 99472420 and ends at 99487804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01708   52496
Cards
Entrez_Gene (NCBI)LINC01708  101928270  long intergenic non-protein coding RNA 1708
Aliases
GeneCards (Weizmann)LINC01708
Ensembl hg19 (Hinxton)ENSG00000224445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224445 [Gene_View]  chr1:99472420-99487804 [Contig_View]  LINC01708 [Vega]
ICGC DataPortalENSG00000224445
TCGA cBioPortalLINC01708
AceView (NCBI)LINC01708
Genatlas (Paris)LINC01708
WikiGenes101928270
SOURCE (Princeton)LINC01708
Genetics Home Reference (NIH)LINC01708
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01708  -     chr1:99472420-99487804 -  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01708  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC01708 - 1p21.2 [CytoView hg19]  LINC01708 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBILINC01708 [Mapview hg19]  LINC01708 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA195612
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01708
Cluster EST : UnigeneHs.576048 [ NCBI ]
CGAP (NCI)Hs.576048
Alternative Splicing GalleryENSG00000224445
Gene ExpressionLINC01708 [ NCBI-GEO ]   LINC01708 [ EBI - ARRAY_EXPRESS ]   LINC01708 [ SEEK ]   LINC01708 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01708 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928270
GTEX Portal (Tissue expression)LINC01708
Human Protein AtlasENSG00000224445-LINC01708 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01708
DMDM Disease mutations101928270
Blocks (Seattle)LINC01708
Human Protein Atlas [tissue]ENSG00000224445-LINC01708 [tissue]
Protein Interaction databases
FunCoupENSG00000224445
BioGRIDLINC01708
STRING (EMBL)LINC01708
ZODIACLINC01708
Ontologies - Pathways
Huge Navigator LINC01708 [HugePedia]
snp3D : Map Gene to Disease101928270
BioCentury BCIQLINC01708
ClinGenLINC01708
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928270
Clinical trialLINC01708
Miscellaneous
canSAR (ICR)LINC01708 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01708
EVEXLINC01708
GoPubMedLINC01708
iHOPLINC01708
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.