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LINC01712 (long intergenic non-protein coding RNA 1712)

Identity

Other alias-
HGNC (Hugo) LINC01712
LocusID (NCBI) 101927542
Atlas_Id 78903
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 83446054 and ends at 83454771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01712   52499
Cards
Entrez_Gene (NCBI)LINC01712  101927542  long intergenic non-protein coding RNA 1712
Aliases
GeneCards (Weizmann)LINC01712
Ensembl hg19 (Hinxton)ENSG00000231364 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231364 [Gene_View]  chr1:83446054-83454771 [Contig_View]  LINC01712 [Vega]
ICGC DataPortalENSG00000231364
TCGA cBioPortalLINC01712
AceView (NCBI)LINC01712
Genatlas (Paris)LINC01712
WikiGenes101927542
SOURCE (Princeton)LINC01712
Genetics Home Reference (NIH)LINC01712
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01712  -     chr1:83446054-83454771 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01712  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC01712 - 1p31.1 [CytoView hg19]  LINC01712 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILINC01712 [Mapview hg19]  LINC01712 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043544
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01712
Cluster EST : UnigeneHs.623976 [ NCBI ]
CGAP (NCI)Hs.623976
Alternative Splicing GalleryENSG00000231364
Gene ExpressionLINC01712 [ NCBI-GEO ]   LINC01712 [ EBI - ARRAY_EXPRESS ]   LINC01712 [ SEEK ]   LINC01712 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01712 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927542
GTEX Portal (Tissue expression)LINC01712
Human Protein AtlasENSG00000231364-LINC01712 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01712
DMDM Disease mutations101927542
Blocks (Seattle)LINC01712
Human Protein Atlas [tissue]ENSG00000231364-LINC01712 [tissue]
Protein Interaction databases
FunCoupENSG00000231364
BioGRIDLINC01712
STRING (EMBL)LINC01712
ZODIACLINC01712
Ontologies - Pathways
Huge Navigator LINC01712 [HugePedia]
snp3D : Map Gene to Disease101927542
BioCentury BCIQLINC01712
ClinGenLINC01712
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927542
Clinical trialLINC01712
Miscellaneous
canSAR (ICR)LINC01712 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01712
EVEXLINC01712
GoPubMedLINC01712
iHOPLINC01712
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:07 CET 2017

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