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LINC01713 (long intergenic non-protein coding RNA 1713)

Identity

Other alias-
HGNC (Hugo) LINC01713
LocusID (NCBI) 105372516
Atlas_Id 79215
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 6730741 and ends at 6736136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC01713   52500
Cards
Entrez_Gene (NCBI)LINC01713  105372516  long intergenic non-protein coding RNA 1713
Aliases
GeneCards (Weizmann)LINC01713
Ensembl hg19 (Hinxton)ENSG00000228482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228482 [Gene_View]  chr20:6730741-6736136 [Contig_View]  LINC01713 [Vega]
ICGC DataPortalENSG00000228482
TCGA cBioPortalLINC01713
AceView (NCBI)LINC01713
Genatlas (Paris)LINC01713
WikiGenes105372516
SOURCE (Princeton)LINC01713
Genetics Home Reference (NIH)LINC01713
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01713  -     chr20:6730741-6736136 -  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01713  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01713 - 20p12.3 [CytoView hg19]  LINC01713 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBILINC01713 [Mapview hg19]  LINC01713 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG822004
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01713
Cluster EST : UnigeneHs.580741 [ NCBI ]
CGAP (NCI)Hs.580741
Alternative Splicing GalleryENSG00000228482
Gene ExpressionLINC01713 [ NCBI-GEO ]   LINC01713 [ EBI - ARRAY_EXPRESS ]   LINC01713 [ SEEK ]   LINC01713 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01713 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105372516
GTEX Portal (Tissue expression)LINC01713
Human Protein AtlasENSG00000228482-LINC01713 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01713
DMDM Disease mutations105372516
Blocks (Seattle)LINC01713
Human Protein Atlas [tissue]ENSG00000228482-LINC01713 [tissue]
Protein Interaction databases
FunCoupENSG00000228482
BioGRIDLINC01713
STRING (EMBL)LINC01713
ZODIACLINC01713
Ontologies - Pathways
Huge Navigator LINC01713 [HugePedia]
snp3D : Map Gene to Disease105372516
BioCentury BCIQLINC01713
ClinGenLINC01713
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105372516
Clinical trialLINC01713
Miscellaneous
canSAR (ICR)LINC01713 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01713
EVEXLINC01713
GoPubMedLINC01713
iHOPLINC01713
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:45 CET 2017

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