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LINC01715 (long intergenic non-protein coding RNA 1715)

Identity

Other alias-
HGNC (Hugo) LINC01715
LocusID (NCBI) 105378616
Atlas_Id 80036
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28643256 and ends at 28648799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC01715   52502
Cards
Entrez_Gene (NCBI)LINC01715  105378616  long intergenic non-protein coding RNA 1715
Aliases
GeneCards (Weizmann)LINC01715
Ensembl hg19 (Hinxton)ENSG00000229388 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229388 [Gene_View]  chr1:28643256-28648799 [Contig_View]  LINC01715 [Vega]
ICGC DataPortalENSG00000229388
TCGA cBioPortalLINC01715
AceView (NCBI)LINC01715
Genatlas (Paris)LINC01715
WikiGenes105378616
SOURCE (Princeton)LINC01715
Genetics Home Reference (NIH)LINC01715
Genomic and cartography
GoldenPath hg38 (UCSC)LINC01715  -     chr1:28643256-28648799 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC01715  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblLINC01715 - 1p35.3 [CytoView hg19]  LINC01715 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBILINC01715 [Mapview hg19]  LINC01715 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI928451
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC01715
Cluster EST : UnigeneHs.697117 [ NCBI ]
CGAP (NCI)Hs.697117
Alternative Splicing GalleryENSG00000229388
Gene ExpressionLINC01715 [ NCBI-GEO ]   LINC01715 [ EBI - ARRAY_EXPRESS ]   LINC01715 [ SEEK ]   LINC01715 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC01715 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105378616
GTEX Portal (Tissue expression)LINC01715
Human Protein AtlasENSG00000229388-LINC01715 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC01715
DMDM Disease mutations105378616
Blocks (Seattle)LINC01715
Human Protein Atlas [tissue]ENSG00000229388-LINC01715 [tissue]
Protein Interaction databases
FunCoupENSG00000229388
BioGRIDLINC01715
STRING (EMBL)LINC01715
ZODIACLINC01715
Ontologies - Pathways
Huge Navigator LINC01715 [HugePedia]
snp3D : Map Gene to Disease105378616
BioCentury BCIQLINC01715
ClinGenLINC01715
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105378616
Clinical trialLINC01715
Miscellaneous
canSAR (ICR)LINC01715 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC01715
EVEXLINC01715
GoPubMedLINC01715
iHOPLINC01715
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:39:57 CET 2017

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